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conda_info.txt
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conda_info.txt
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# packages in environment at /home/salamzade/zol_development/showcase_examples_redo/conda_env:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
alsa-lib 1.2.8 h166bdaf_0 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
archspec 0.2.3 pyhd8ed1ab_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
axel 2.17.11 h28343ad_0 conda-forge
binutils 2.40 h4852527_0 conda-forge
binutils_impl_linux-64 2.40 ha885e6a_0 conda-forge
binutils_linux-64 2.40 hdade7a5_3 conda-forge
bioconductor-ggtree 3.6.0 r42hdfd78af_0 bioconda
bioconductor-treeio 1.22.0 r42hdfd78af_0 bioconda
biopython 1.79 py310h5764c6d_3 conda-forge
blast 2.15.0 pl5321h6f7f691_1 bioconda
boost-cpp 1.74.0 h75c5d50_8 conda-forge
brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge
bwidget 1.9.14 ha770c72_1 conda-forge
bzip2 1.0.8 hd590300_5 conda-forge
c-ares 1.28.1 hd590300_0 conda-forge
c-compiler 1.7.0 hd590300_1 conda-forge
ca-certificates 2024.2.2 hbcca054_0 conda-forge
cairo 1.16.0 ha61ee94_1014 conda-forge
cd-hit 4.8.1 h43eeafb_10 bioconda
certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
curl 8.7.1 hdbd6064_0
cxx-compiler 1.7.0 h00ab1b0_1 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
diamond 2.0.15 hb97b32f_1 bioconda
entrez-direct 21.6 he881be0_0 bioconda
ete3 3.1.3 pyhd8ed1ab_0 conda-forge
expat 2.6.2 h59595ed_0 conda-forge
fasttree 2.1.11 h031d066_3 bioconda
fftw 3.3.10 nompi_hc118613_108 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_2 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
gcc 12.3.0 h915e2ae_7 conda-forge
gcc_impl_linux-64 12.3.0 h58ffeeb_7 conda-forge
gcc_linux-64 12.3.0 h6477408_3 conda-forge
gettext 0.22.5 h59595ed_2 conda-forge
gettext-tools 0.22.5 h59595ed_2 conda-forge
gfortran_impl_linux-64 12.3.0 h1645026_7 conda-forge
glib 2.78.1 hfc55251_0 conda-forge
glib-tools 2.78.1 hfc55251_0 conda-forge
graphite2 1.3.13 h59595ed_1003 conda-forge
gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.22.0 h4243ec0_2 conda-forge
gstreamer 1.22.0 h25f0c4b_2 conda-forge
gstreamer-orc 0.4.38 hd590300_0 conda-forge
gxx 12.3.0 h915e2ae_7 conda-forge
gxx_impl_linux-64 12.3.0 h2a574ab_7 conda-forge
gxx_linux-64 12.3.0 h4a1b8e8_3 conda-forge
harfbuzz 6.0.0 h8e241bc_0 conda-forge
hmmer 3.4 hdbdd923_1 bioconda
hyphy 2.5.57 h0705fce_0 bioconda
icu 70.1 h27087fc_0 conda-forge
idna 3.7 pyhd8ed1ab_0 conda-forge
jack 1.9.22 h11f4161_0 conda-forge
joblib 1.4.2 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_17 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.20.1 h81ceb04_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
ld_impl_linux-64 2.40 h55db66e_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libasprintf 0.22.5 h661eb56_2 conda-forge
libasprintf-devel 0.22.5 h661eb56_2 conda-forge
libblas 3.9.0 22_linux64_openblas conda-forge
libcap 2.67 he9d0100_0 conda-forge
libcblas 3.9.0 22_linux64_openblas conda-forge
libclang 15.0.7 default_h127d8a8_5 conda-forge
libclang13 15.0.7 default_h5d6823c_5 conda-forge
libcups 2.3.3 h36d4200_3 conda-forge
libcurl 8.7.1 h251f7ec_0
libdb 6.2.32 h9c3ff4c_0 conda-forge
libdeflate 1.18 h0b41bf4_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 hd590300_2 conda-forge
libevent 2.1.10 h28343ad_4 conda-forge
libexpat 2.6.2 h59595ed_0 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-devel_linux-64 12.3.0 h0223996_107 conda-forge
libgcc-ng 13.2.0 h77fa898_7 conda-forge
libgcrypt 1.10.3 hd590300_0 conda-forge
libgettextpo 0.22.5 h59595ed_2 conda-forge
libgettextpo-devel 0.22.5 h59595ed_2 conda-forge
libgfortran-ng 13.2.0 h69a702a_7 conda-forge
libgfortran5 13.2.0 hca663fb_7 conda-forge
libglib 2.78.1 hebfc3b9_0 conda-forge
libgomp 13.2.0 h77fa898_7 conda-forge
libgpg-error 1.49 h4f305b6_0 conda-forge
libiconv 1.17 hd590300_2 conda-forge
libidn2 2.3.7 hd590300_0 conda-forge
libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge
liblapack 3.9.0 22_linux64_openblas conda-forge
libllvm15 15.0.7 hadd5161_1 conda-forge
libnghttp2 1.58.0 h47da74e_0 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.27 pthreads_h413a1c8_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.43 h2797004_0 conda-forge
libpq 15.3 hbcd7760_1 conda-forge
libsanitizer 12.3.0 hb8811af_7 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsqlite 3.45.3 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-devel_linux-64 12.3.0 h0223996_107 conda-forge
libstdcxx-ng 13.2.0 hc0a3c3a_7 conda-forge
libsystemd0 253 h8c4010b_1 conda-forge
libtiff 4.5.1 h8b53f26_1 conda-forge
libtool 2.4.7 h27087fc_0 conda-forge
libudev1 253 h0b41bf4_1 conda-forge
libunistring 0.9.10 h7f98852_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.4.0 hd590300_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libxkbcommon 1.5.0 h79f4944_1 conda-forge
libxml2 2.10.3 hca2bb57_4 conda-forge
libxslt 1.1.37 h873f0b0_0 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
lxml 4.9.2 py310hbdc0903_0 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
make 4.3 hd18ef5c_1 conda-forge
mcl 22.282 pl5321h031d066_1 bioconda
miniprot 0.7 h7132678_0 bioconda
mpg123 1.32.6 h59595ed_0 conda-forge
mpi 1.0 openmpi conda-forge
muscle 5.1 h4ac6f70_3 bioconda
mysql-common 8.0.33 hf1915f5_6 conda-forge
mysql-libs 8.0.33 hca2cd23_6 conda-forge
ncbi-genome-download 0.3.3 pyh7cba7a3_0 bioconda
ncbi-vdb 3.1.0 h4ac6f70_2 bioconda
ncurses 6.5 h59595ed_0 conda-forge
networkx 3.3 pyhd8ed1ab_1 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.100 hca3bf56_0 conda-forge
numpy 1.26.4 py310hb13e2d6_0 conda-forge
openmpi 4.1.6 hc5af2df_101 conda-forge
openssl 3.1.5 hd590300_0 conda-forge
packaging 24.0 pyhd8ed1ab_0 conda-forge
pal2nal 14.1 pl5321hdfd78af_3 bioconda
pandas 2.2.2 py310hf9f9076_1 conda-forge
pango 1.50.14 hd33c08f_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
perl 5.32.1 7_hd590300_perl5 conda-forge
perl-archive-tar 2.40 pl5321hdfd78af_0 bioconda
perl-carp 1.50 pl5321hd8ed1ab_0 conda-forge
perl-common-sense 3.75 pl5321hd8ed1ab_0 conda-forge
perl-compress-raw-bzip2 2.201 pl5321h166bdaf_0 conda-forge
perl-compress-raw-zlib 2.202 pl5321h166bdaf_0 conda-forge
perl-encode 3.21 pl5321hd590300_0 conda-forge
perl-exporter 5.74 pl5321hd8ed1ab_0 conda-forge
perl-exporter-tiny 1.002002 pl5321hd8ed1ab_0 conda-forge
perl-extutils-makemaker 7.70 pl5321hd8ed1ab_0 conda-forge
perl-getopt-long 2.54 pl5321hdfd78af_0 bioconda
perl-io-compress 2.201 pl5321hdbdd923_2 bioconda
perl-io-zlib 1.14 pl5321hdfd78af_0 bioconda
perl-json 4.10 pl5321hdfd78af_0 bioconda
perl-json-xs 2.34 pl5321h4ac6f70_6 bioconda
perl-list-moreutils 0.430 pl5321hdfd78af_0 bioconda
perl-list-moreutils-xs 0.430 pl5321h031d066_2 bioconda
perl-parent 0.241 pl5321hd8ed1ab_0 conda-forge
perl-pathtools 3.75 pl5321h166bdaf_0 conda-forge
perl-scalar-list-utils 1.63 pl5321h166bdaf_0 conda-forge
perl-storable 3.15 pl5321h166bdaf_0 conda-forge
perl-types-serialiser 1.01 pl5321hdfd78af_0 bioconda
pip 24.0 pyhd8ed1ab_0 conda-forge
pixman 0.43.2 h59595ed_0 conda-forge
ply 3.11 pyhd8ed1ab_2 conda-forge
pomegranate 0.13.3 py310h91b1402_3 conda-forge
prodigal 2.6.3 h031d066_8 bioconda
prodigal-gv 2.11.0 he4a0461_2 bioconda
psutil 5.9.8 py310h2372a71_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
pulseaudio 16.1 hcb278e6_3 conda-forge
pulseaudio-client 16.1 h5195f5e_3 conda-forge
pulseaudio-daemon 16.1 ha8d29e2_3 conda-forge
pyhmmer 0.10.12 py310h4b81fae_0 bioconda
pyqt 5.15.9 py310h04931ad_5 conda-forge
pyqt5-sip 12.12.2 py310hc6cd4ac_5 conda-forge
pyrodigal 3.3.0 py310h4b81fae_1 bioconda
pysocks 1.7.1 py310hff52083_5 conda-forge
python 3.10.13 hd12c33a_0_cpython conda-forge
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge
python_abi 3.10 4_cp310 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.1 py310h2372a71_1 conda-forge
qt-main 5.15.8 h67dfc38_7 conda-forge
r-ape 5.8 r42h08d816e_0 conda-forge
r-aplot 0.2.2 r42hc72bb7e_0 conda-forge
r-base 4.2.3 h062c8ea_1 conda-forge
r-cachem 1.1.0 r42hb1dbf0f_0 conda-forge
r-cli 3.6.2 r42ha503ecb_0 conda-forge
r-colorspace 2.1_0 r42h57805ef_1 conda-forge
r-commonmark 1.9.1 r42h57805ef_0 conda-forge
r-cowplot 1.1.3 r42hc72bb7e_0 conda-forge
r-crayon 1.5.2 r42hc72bb7e_2 conda-forge
r-curl 5.1.0 r42hf9611b0_0 conda-forge
r-digest 0.6.35 r42ha503ecb_0 conda-forge
r-dplyr 1.1.4 r42ha503ecb_0 conda-forge
r-ellipsis 0.3.2 r42h57805ef_2 conda-forge
r-fansi 1.0.6 r42h57805ef_0 conda-forge
r-farver 2.1.2 r42ha18555a_0 conda-forge
r-fastmap 1.2.0 r42ha18555a_0 conda-forge
r-fs 1.6.4 r42ha18555a_0 conda-forge
r-generics 0.1.3 r42hc72bb7e_2 conda-forge
r-ggfittext 0.10.2 r42hc72bb7e_0 conda-forge
r-ggfun 0.1.4 r42hc72bb7e_0 conda-forge
r-gggenes 0.5.1 r42hc72bb7e_0 conda-forge
r-ggplot2 3.5.1 r42hc72bb7e_0 conda-forge
r-ggplotify 0.1.2 r42hc72bb7e_0 conda-forge
r-glue 1.7.0 r42h57805ef_0 conda-forge
r-gridextra 2.3 r42hc72bb7e_1005 conda-forge
r-gridgraphics 0.5_1 r42hc72bb7e_2 conda-forge
r-gridtext 0.1.5 r42ha503ecb_2 conda-forge
r-gtable 0.3.5 r42hc72bb7e_0 conda-forge
r-isoband 0.2.7 r42ha503ecb_2 conda-forge
r-jpeg 0.1_10 r42h0de940f_3 conda-forge
r-jsonlite 1.8.8 r42h57805ef_0 conda-forge
r-labeling 0.4.3 r42hc72bb7e_0 conda-forge
r-lattice 0.22_6 r42h57805ef_0 conda-forge
r-lazyeval 0.2.2 r42h57805ef_4 conda-forge
r-lifecycle 1.0.4 r42hc72bb7e_0 conda-forge
r-magrittr 2.0.3 r42h57805ef_2 conda-forge
r-markdown 1.12 r42hc72bb7e_0 conda-forge
r-mass 7.3_60.0.1 r42h57805ef_0 conda-forge
r-matrix 1.6_5 r42h316c678_0 conda-forge
r-memoise 2.0.1 r42hc72bb7e_2 conda-forge
r-mgcv 1.9_1 r42h316c678_0 conda-forge
r-mime 0.12 r42h57805ef_2 conda-forge
r-munsell 0.5.1 r42hc72bb7e_0 conda-forge
r-nlme 3.1_164 r42h61816a4_0 conda-forge
r-patchwork 1.2.0 r42hc72bb7e_0 conda-forge
r-pillar 1.9.0 r42hc72bb7e_1 conda-forge
r-pkgconfig 2.0.3 r42hc72bb7e_3 conda-forge
r-png 0.1_8 r42h81d01c5_1 conda-forge
r-purrr 1.0.2 r42h57805ef_0 conda-forge
r-r6 2.5.1 r42hc72bb7e_2 conda-forge
r-rcolorbrewer 1.1_3 r42h785f33e_2 conda-forge
r-rcpp 1.0.12 r42h7df8631_0 conda-forge
r-rlang 1.1.3 r42ha503ecb_0 conda-forge
r-scales 1.3.0 r42hc72bb7e_0 conda-forge
r-shades 1.4.0 r42hc72bb7e_3 conda-forge
r-stringi 1.7.12 r42h1ae9187_0 conda-forge
r-stringr 1.5.1 r42h785f33e_0 conda-forge
r-tibble 3.2.1 r42h57805ef_2 conda-forge
r-tidyr 1.3.1 r42ha503ecb_0 conda-forge
r-tidyselect 1.2.1 r42hc72bb7e_0 conda-forge
r-tidytree 0.4.6 r42hc72bb7e_0 conda-forge
r-utf8 1.2.4 r42h57805ef_0 conda-forge
r-vctrs 0.6.5 r42ha503ecb_0 conda-forge
r-viridislite 0.4.2 r42hc72bb7e_1 conda-forge
r-withr 3.0.0 r42hc72bb7e_0 conda-forge
r-xfun 0.44 r42ha18555a_0 conda-forge
r-xml2 1.3.3 r42h044e5c7_2 conda-forge
r-yulab.utils 0.1.4 r42hc72bb7e_0 conda-forge
readline 8.2 h8228510_1 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
scikit-learn 1.4.2 py310h981052a_1 conda-forge
scipy 1.13.0 py310h93e2701_1 conda-forge
sed 4.8 he412f7d_0 conda-forge
setuptools 57.4.0 py310hff52083_2 conda-forge
sip 6.7.12 py310hc6cd4ac_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
skani 0.2.1 h4ac6f70_0 bioconda
slclust 02022010 1 bioconda
sysroot_linux-64 2.12 he073ed8_17 conda-forge
threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
tktable 2.10 h0c5db8f_5 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tqdm 4.66.4 pyhd8ed1ab_0 conda-forge
trimal 1.4.1 h4ac6f70_9 bioconda
tzdata 2024a h0c530f3_0 conda-forge
urllib3 2.2.1 pyhd8ed1ab_0 conda-forge
wget 1.20.3 ha35d2d1_1 conda-forge
wheel 0.43.0 pyhd8ed1ab_1 conda-forge
xcb-util 0.4.0 h516909a_0 conda-forge
xcb-util-image 0.4.0 h166bdaf_0 conda-forge
xcb-util-keysyms 0.4.0 h516909a_0 conda-forge
xcb-util-renderutil 0.3.9 h166bdaf_0 conda-forge
xcb-util-wm 0.4.1 h516909a_0 conda-forge
xkeyboard-config 2.38 h0b41bf4_0 conda-forge
xlsxwriter 3.1.9 pyhd8ed1ab_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.8.4 h0b41bf4_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-libxt 1.3.0 hd590300_0 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
zol 1.4.1 dev_0 <develop>
zstd 1.5.6 ha6fb4c9_0 conda-forge