-
Notifications
You must be signed in to change notification settings - Fork 15
/
Copy pathmain.nf
60 lines (46 loc) · 1.81 KB
/
main.nf
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
#!/usr/bin/env nextflow
/*
========================================================================================
Autometa
========================================================================================
Autometa's Nextflow Analysis Pipeline
Github : https://github.com/KwanLab/Autometa
Documentation : https://autometa.readthedocs.io/en/latest/
----------------------------------------------------------------------------------------
*/
nextflow.enable.dsl = 2
/*
========================================================================================
VALIDATE & PRINT PARAMETER SUMMARY
========================================================================================
*/
WorkflowMain.initialise(workflow, params, log)
////////////////////////////////////////////////////
/* -- VALIDATE PARAMETERS -- */
////////////////////////////////////////////////////
println """
--------------------------------------------
Output files will be found here:
Results directory: ${params.outdir}
--------------------------------------------
\n
"""
/*
========================================================================================
NAMED WORKFLOW FOR PIPELINE
========================================================================================
*/
include { AUTOMETA } from './workflows/autometa.nf' addParams(single_db_dir: params.single_db_dir)
/*
========================================================================================
Run Autometa
========================================================================================
*/
workflow {
AUTOMETA()
}
/*
========================================================================================
THE END
========================================================================================
*/