CHANGELOG

<h3>Changelog</h3>

<h4>Vanted v2.8.8 release (31/07/2023)<h4>
<ul>
<li>Bugfix in Open-File dialog after exporting to a website</li>
<li>Improve KEGG search with organisms and pathways labelling</li>
<li>New feature: Modify the drawn grid</br>(Edit > Preferences > Views > Network View)</li>
<li>Fix regression in 2.8.6+ concerning attribute labels (GraphML)</li>
<li>Improve GraphML import compatibility: recognize certain top-level tags as node/edge labels</li>
</ul>

<h4>Vanted v2.8.7 release (18/07/2023)<h4>
<ul>
<li>Bugfixes for v2.8.6 and improvements in add-ons compatibility</li>
<li>Node ID as fallback label where suitable</li>
<li>Improve GraphML import compatibility</li>
<li>Change network view icon to Vanted logo</li>
</ul>

<h4>Vanted v2.8.6 release (17/07/2023)<h4>
<ul>
<li>Update for KEGG Database:</br>
    <ul>
        <li>Resolve issues replacing ID with name</li>
	<li>Modify Labels KEGG: disable for non-KEGG graphs</li>
    </ul>
<li>Improve GraphML import compatibility</li>
</ul>

<h4>Vanted v2.8.5 release (16/04/2023)<h4>
<ul>
<li>Update certificate, code signing JAR files</li>
<li>Fix regression concerning Vanted preferences</li>
</ul>

<h4>Vanted v2.8.4 release (03/03/2023)<h4>
<ul>
<li>Update list connection in KEGG API, as per Release 104</li>
</ul>

<h4>Vanted v2.8.3 release (07/07/2022)<h4>
<ul>
<li>Update for Biomodels Database:</br>
    <ul>
        <li>REST implementation</li>
        <li>New multi-parameter queries</li>
        <li>New part-string matching for more search results</li>
    <ul>
</li>
<li>Fix redirecting for KEGG Database</li>
</ul>

<h4>VANTED v2.8.2 release (03/01/2022)</h4>
<ul>
<li>Fix Log4j vulnerability</li>
</ul>

<h4>VANTED v2.8.1 release (14/05/2021)</h4>
<ul>
<li>Bugfixes and internal improvements: Algorithms</li>
<li>Bugfixes and internal improvements: Default graph format</li>
</ul>

<h4>VANTED v2.8.0 release (19/04/2021)</h4>
<ul>
<li>New layout: Stress Minimisation</li>
<li>New layout: Multilevel Framework</li>
<li>Use commons-math3 3.6.1</li>
<li>Resolve attribute issue</li>
<li>Deactivate Biomodels DB (current version)</li>
<li>New algorithm: Remove parallel edges</li>
<li>Bugfixes and internal updates, e.g. new JSON library</li>
</ul>

<h4>VANTED v2.7.2 release (20/07/2020)</h4>
<ul>
<li>Resolve OS and compatibility issue</li>
</ul>

<h4>VANTED v2.7.1 release (13/07/2020)</h4>
<ul>
<li>Resolve constant updating</li>
</ul>

<h4>VANTED v2.7.0 release (08/07/2020)</h4>
<ul>
<li>Minimum Java 8 compatibility</li>
<li>Bugfixes: Clustering</li>
<li>RIMAS server migration</li>
<li>HTTPS server connections</li>
<li>Resolves HTTP-HTTPS redirecting</li>
<li>BioModels: Handles parsing exception in queries</li>
<li>Add-on Manager and Add-on Pane improvements</li>
<li>Undo/Redo additions</li>
<li>Usability improvements:</br>
	<ul>
		<li>Menu updates</li>
		<li>First graph window fits in pane</li>
		<li>Undo limit increases to 20 operations</li>
	</ul>
</li>
<li>Standard format becomes GML</li>
<li>Internal API improvements</li>
<li>Replaces non-API Sun references</li>
</ul>

<h4>VANTED v2.6.5 release (29/03/2018)</h4>
<ul>
<li>Java 9 Compatibility Update</li>
<li>Several algorithms improved, including<br/>
	<ol>
		<li>Find and Layout Circles</li>
		<li>Merge Nodes</li>
		<li>Erdos-Renyi Graph Generation</li>
		<li>Watts-Strogatz Graph Generation</li>
		<li>Grubbs' Test</li>
		<li>David Test</li>
	</ol>
</li>
<li>Minor BioModels update</li>
<li>OS X in-graph grid movement fix</li>
<li>Overall internal improvements</li>
</ul>

<h4>VANTED v2.6.4 release (09/12/2017)</h4>
<ul>
<li><i>High DPI Support</i> feature</li>
<li>Nimbus LookAndFeel is now disabled</li>
<li>Edge selection positioning</li>
<li>Metacrop stability improvements</li>
<li>Detached mode update</li>
<li>Node Functions enhancements</li>
<li>Server update</li>
<li>Windows Installer update</li>
<li>Overall performance and stability improvements</li>
<li>Minor bug fixes</li>
</ul>

<h4>VANTED v2.6.3 release (16/09/2016)</h4>
<ul>
<li>Fixed drawing problems of nodes with border size 1
<li>Fixed GraphML reader.
<li>Added support for more SBGN shapes
<li>Added BioModels backup webservice location
<li>Changed MetaCrop maps to cupport new SBGN Shapes
</ul>

<h4>VANTED v2.6.2 release (09/03/2016)</h4>
<ul>
<li>Minor bugfixes
<li>Native support for more SBGN Shapes
<li>Relative positioning of labels

</ul>


<h4>VANTED v2.6.1 release (19/01/2016)</h4>
<ul>
<li>Bugfixes including broken compatibility with SBGN-Ed
<li>Update to new jsbml 1.1 library
<li>Changes and bugfixes in APIs for Developers
</ul>

<h4>VANTED v2.6.0 release (27/11/2015)</h4>
Bugfixes:
<ul>
<li>Code clean-up and removal of bugs using bug-scanner tools
<li>Cluster background was not exported to image
<li>Introducing edge bends is now working properly
<li>Sometimes specific changes didn't visually appear and a redraw had to be triggered
</ul>
Improvements:
<ul>
<li>Update scan improved to support md5-hash and includes add-ons as well
<li>Performance improvement for larger networks (30k Nodes and more)
<li>Support for the SBML-Layout extension
<li>Added Animation Framework
<li>Selection frames can now be drawn inside nodes using Ctrl+Shift
<li>Nodes can be created inside other nodes using Ctrl+Shift
</ul>

<h4>VANTED v2.5.3 release (05/10/2015)</h4>
Bugfixes:
<ul>
<li>start up problems, when no previous preferences were found to select LookAndFeel
<li>several minor bugfixes found and fixed throughout heavy usage
</ul>
Improvements:
<ul>
<li>the "Remove Connecting Nodes" algorithm will now not only remove nodes and keep the overall connection of the network, but also respect the original direction
<li>the ESC key will also deselect network elements

</ul>
<h4>VANTED v2.5.2 release (16/09/2015)</h4>
This release contains only minor bugfixes which improve user experience and speed.