diff --git a/Docs/user_guide/modules/segmentations.md b/Docs/user_guide/modules/segmentations.md index 6ef04abd09a..c5ba8aa0e7a 100644 --- a/Docs/user_guide/modules/segmentations.md +++ b/Docs/user_guide/modules/segmentations.md @@ -144,10 +144,16 @@ The supported representations are listed in the Representations section. Existin See Script repository's [Segmentations section](../../developer_guide/script_repository.md#segmentations) for examples. ### DICOM export -- The source representation is used when exporting into DICOM, therefore you need to select a source volume, create binary labelmap representation and set it as master -- DICOM Segmentation Object export if `QuantitativeReporting` extension is installed -- Legacy DICOM RT structure set export is available if `SlicerRT` extension is installed. RT structure sets are not recommended for storing segmentations, as they cannot store arbitrarily complex 3D shapes. -- Follow [these instructions](dicom.md#export-data-from-the-scene-to-dicom-database) for exporting data in DICOM format. + +- Make sure the source representation is `binary labelmap` (as the source representation is used when exporting into DICOM, and currently only binary labelmap representation is supported). The source representation can be set in `Segmentations` module, `Representations` section. If the yellow star (that designates the source representation) is in the `binary labelmap` row then the representation is already good, no further action is needed. If the yellow star is in another row then click `Make source` button in the `binary labelmap` row (if that button is not shown then click `Create` button first). +- Make sure the necessary extensions are installed: + - `QuantitativeReporting` extension is required for exporting into DICOM Segmentation Object. + - `SlicerRT` extension is required for exporting into legacy DICOM RT Structure Set. RT Structure Sets are not recommended for storing segmentations, as they cannot store arbitrarily complex 3D shapes. +- If the segmented image was not loaded from the DICOM database (for example, if the image was loaded from a NRRD or NIFTI file) then a DICOM image needs to be created in the database and the segmentation must be updated to reference this image (this is necessary because a DICOM requires a segmentation to be associated with a DICOM image) by following these steps: + - [export the source volume to DICOM](dicom.md#export-data-from-the-scene-to-dicom-database) (agree to create patient and study when asked) + - load the exported volume from the DICOM database + - in `Segment Editor` module, click `Specify geometry` button, choose the loaded volume as `Source geometry`, and click OK +- Go to Data module, right-click on the segmentation, choose `Export to DICOM`, and follow [these instructions](dicom.md#export-data-from-the-scene-to-dicom-database). ## Panels and their use