DESCRIPTION

Package: brainflowprobes
Type: Package
Title: Plots and annotation for choosing BrainFlow target probe sequence 
Version: 1.21.0
Date: 2021-08-05
Authors@R: c(person("Amanda", "Price", email = "amanda.joy.price@gmail.com", 
  role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7352-3732")),
  person("Leonardo", "Collado-Torres", role = c("ctb"), 
  email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")))
Description: Use these functions to characterize genomic regions for
  BrainFlow target probe design.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.6.0)
Imports:
    Biostrings (>= 2.52.0),
    BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
    bumphunter (>= 1.26.0),
    cowplot (>= 1.0.0),
    derfinder (>= 1.18.1),
    derfinderPlot (>= 1.18.1),
    GenomicRanges (>= 1.36.0),
    ggplot2 (>= 3.1.1),
    RColorBrewer (>= 1.1),
    utils,
    grDevices,
    GenomicState (>= 0.99.7)
RoxygenNote: 7.2.3
Suggests: 
    BiocStyle,
    knitr,
    RefManageR,
    rmarkdown,
    sessioninfo,
    testthat (>= 2.1.0),
    covr
VignetteBuilder: knitr
URL: https://github.com/LieberInstitute/brainflowprobes
BugReports: https://support.bioconductor.org/t/brainflowprobes
biocViews: Coverage, Visualization, ExperimentalDesign, Transcriptomics, 
    FlowCytometry, GeneTarget
Roxygen: list(markdown = TRUE)
PackageStatus: Deprecated