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junctionCount : can we add a flag to convert strands info #4

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andrewejaffe opened this issue Mar 5, 2020 · 1 comment
Open

junctionCount : can we add a flag to convert strands info #4

andrewejaffe opened this issue Mar 5, 2020 · 1 comment

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@andrewejaffe
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Specifically, when strand information is coded as "?". Right now, these junctions are dropped. It would be good to instead offer the option of converting the "?" to the un-stranded character "*", since some BAM files seem to encode this as unstranded
@lcolladotor lcolladotor removed their assignment Sep 30, 2021
@lcolladotor
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I think that @Nick-Eagles and @gpertea worked on some related issues on SPEAQeasy.

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@andrewejaffe @lcolladotor