diff --git a/cibersortx/04_04_2020/.gitignore b/cibersortx/04_04_2020/.gitignore new file mode 100755 index 0000000..acabb78 --- /dev/null +++ b/cibersortx/04_04_2020/.gitignore @@ -0,0 +1 @@ +fractions_latest.sif diff --git a/cibersortx/04_04_2020/README.md b/cibersortx/04_04_2020/README.md new file mode 100755 index 0000000..12a4cc9 --- /dev/null +++ b/cibersortx/04_04_2020/README.md @@ -0,0 +1,45 @@ +# Installation + +```bash +## Commands used for installing the software + +module load singularity/3.11.4 +singularity pull docker://cibersortx/fractions # no version name is provided + +## Ignore all downloaded/installed files +echo "fractions_latest.sif" > .gitignore + +# Set loose permissions +chmod 775 -R .. + +## Version control files +git add .gitignore +git add README.md +``` + +# Reproducibility + +```bash +## Evaluate the following commands +module list +date +echo "User: ${USER}" +echo "Hostname: ${HOSTNAME}" +``` + +```bash +## copy paste the output from the previous commands +$ module list + +Currently Loaded Modules: + 1) JHPCE_ROCKY9_DEFAULT_ENV 2) JHPCE_tools/3.0 3) singularity/3.11.4 + + + +$ date +Thu Feb 8 01:47:31 PM EST 2024 +$ echo "User: ${USER}" +User: neagles +$ echo "Hostname: ${HOSTNAME}" +Hostname: compute-124.cm.cluster +```