From b89000063d2523762f51645fc3958bc57e3402f3 Mon Sep 17 00:00:00 2001 From: lcolladotor Date: Mon, 6 Jun 2022 16:30:11 -0400 Subject: [PATCH] Ran chmod -R 775 . --- FastQC/0.11.5/.gitignore | 0 FastQC/0.11.5/README.md | 0 FastQC/0.11.8/.gitignore | 0 FastQC/0.11.8/README.md | 0 Salmon/0.11.3/.gitignore | 0 Salmon/0.11.3/README.md | 0 Salmon/0.8.2/.gitignore | 0 Salmon/0.8.2/README.md | 0 gatk/4.2.0.0/.gitignore | 0 gatk/4.2.0.0/README.md | 0 gtex-pipeline/dae3369/.gitignore | 0 kallisto/0.43.0/.gitignore | 0 kallisto/0.43.0/README.md | 0 kallisto/0.44.0/.gitignore | 0 kallisto/0.44.0/README.md | 0 nextflow/20.01.0/.gitignore | 0 picard/2.25.5/.gitignore | 0 qctool/2.0.7/.gitignore | 0 rmate/1.5.10/.gitignore | 0 rmate/1.5.10/README.md | 11 +++++++---- subread/1.5.0-p3/.gitignore | 0 subread/1.5.0-p3/README.md | 0 subread/1.6.3/.gitignore | 0 subread/1.6.3/README.md | 0 24 files changed, 7 insertions(+), 4 deletions(-) mode change 100644 => 100755 FastQC/0.11.5/.gitignore mode change 100644 => 100755 FastQC/0.11.5/README.md mode change 100644 => 100755 FastQC/0.11.8/.gitignore mode change 100644 => 100755 FastQC/0.11.8/README.md mode change 100644 => 100755 Salmon/0.11.3/.gitignore mode change 100644 => 100755 Salmon/0.11.3/README.md mode change 100644 => 100755 Salmon/0.8.2/.gitignore mode change 100644 => 100755 Salmon/0.8.2/README.md mode change 100644 => 100755 gatk/4.2.0.0/.gitignore mode change 100644 => 100755 gatk/4.2.0.0/README.md mode change 100644 => 100755 gtex-pipeline/dae3369/.gitignore mode change 100644 => 100755 kallisto/0.43.0/.gitignore mode change 100644 => 100755 kallisto/0.43.0/README.md mode change 100644 => 100755 kallisto/0.44.0/.gitignore mode change 100644 => 100755 kallisto/0.44.0/README.md mode change 100644 => 100755 nextflow/20.01.0/.gitignore mode change 100644 => 100755 picard/2.25.5/.gitignore mode change 100644 => 100755 qctool/2.0.7/.gitignore mode change 100644 => 100755 rmate/1.5.10/.gitignore mode change 100644 => 100755 subread/1.5.0-p3/.gitignore mode change 100644 => 100755 subread/1.5.0-p3/README.md mode change 100644 => 100755 subread/1.6.3/.gitignore mode change 100644 => 100755 subread/1.6.3/README.md diff --git a/FastQC/0.11.5/.gitignore b/FastQC/0.11.5/.gitignore old mode 100644 new mode 100755 diff --git a/FastQC/0.11.5/README.md b/FastQC/0.11.5/README.md old mode 100644 new mode 100755 diff --git a/FastQC/0.11.8/.gitignore b/FastQC/0.11.8/.gitignore old mode 100644 new mode 100755 diff --git a/FastQC/0.11.8/README.md b/FastQC/0.11.8/README.md old mode 100644 new mode 100755 diff --git a/Salmon/0.11.3/.gitignore b/Salmon/0.11.3/.gitignore old mode 100644 new mode 100755 diff --git a/Salmon/0.11.3/README.md b/Salmon/0.11.3/README.md old mode 100644 new mode 100755 diff --git a/Salmon/0.8.2/.gitignore b/Salmon/0.8.2/.gitignore old mode 100644 new mode 100755 diff --git a/Salmon/0.8.2/README.md b/Salmon/0.8.2/README.md old mode 100644 new mode 100755 diff --git a/gatk/4.2.0.0/.gitignore b/gatk/4.2.0.0/.gitignore old mode 100644 new mode 100755 diff --git a/gatk/4.2.0.0/README.md b/gatk/4.2.0.0/README.md old mode 100644 new mode 100755 diff --git a/gtex-pipeline/dae3369/.gitignore b/gtex-pipeline/dae3369/.gitignore old mode 100644 new mode 100755 diff --git a/kallisto/0.43.0/.gitignore b/kallisto/0.43.0/.gitignore old mode 100644 new mode 100755 diff --git a/kallisto/0.43.0/README.md b/kallisto/0.43.0/README.md old mode 100644 new mode 100755 diff --git a/kallisto/0.44.0/.gitignore b/kallisto/0.44.0/.gitignore old mode 100644 new mode 100755 diff --git a/kallisto/0.44.0/README.md b/kallisto/0.44.0/README.md old mode 100644 new mode 100755 diff --git a/nextflow/20.01.0/.gitignore b/nextflow/20.01.0/.gitignore old mode 100644 new mode 100755 diff --git a/picard/2.25.5/.gitignore b/picard/2.25.5/.gitignore old mode 100644 new mode 100755 diff --git a/qctool/2.0.7/.gitignore b/qctool/2.0.7/.gitignore old mode 100644 new mode 100755 diff --git a/rmate/1.5.10/.gitignore b/rmate/1.5.10/.gitignore old mode 100644 new mode 100755 diff --git a/rmate/1.5.10/README.md b/rmate/1.5.10/README.md index a9a2d7a..753b290 100755 --- a/rmate/1.5.10/README.md +++ b/rmate/1.5.10/README.md @@ -7,6 +7,8 @@ git clone git@github.com:textmate/rmate.git ## Ignore all downloaded/installed files echo "rmate" >> .gitignore +chmod -R 775 . + ## Version control files git add .gitignore git add README.md @@ -26,15 +28,16 @@ echo "Hostname: ${HOSTNAME}" $ module list Currently Loaded Modules: - 1) matlab/R2019a 3) JHPCE_tools/1.0 5) gcc/4.4.7 7) JHPCE_CENTOS7_DEFAULT_ENV - 2) stata/16 4) sge/8.1.9 6) COMMUNITY_CENTOS7_DEFAULT_ENV 8) git/2.17.0 + 1) matlab/R2019a 4) sge/8.1.9 7) JHPCE_CENTOS7_DEFAULT_ENV 10) git-lfs/2.8.0 13) conda_R/devel + 2) stata/17 5) gcc/4.4.7 8) git-status-size/github 11) rmate/1.5.9 + 3) JHPCE_tools/1.0 6) COMMUNITY_CENTOS7_DEFAULT_ENV 9) git/2.28.0 12) conda/3-4.6.14 $ date -Thu Aug 29 10:40:40 EDT 2019 +Mon Jun 6 16:09:54 EDT 2022 $ echo "User: ${USER}" User: lcollado $ echo "Hostname: ${HOSTNAME}" -Hostname: compute-070.cm.cluster +Hostname: compute-093.cm.cluster ``` diff --git a/subread/1.5.0-p3/.gitignore b/subread/1.5.0-p3/.gitignore old mode 100644 new mode 100755 diff --git a/subread/1.5.0-p3/README.md b/subread/1.5.0-p3/README.md old mode 100644 new mode 100755 diff --git a/subread/1.6.3/.gitignore b/subread/1.6.3/.gitignore old mode 100644 new mode 100755 diff --git a/subread/1.6.3/README.md b/subread/1.6.3/README.md old mode 100644 new mode 100755