diff --git a/PRSice/2.2.8/.gitignore b/PRSice/2.2.8/.gitignore deleted file mode 100755 index b8e6682..0000000 --- a/PRSice/2.2.8/.gitignore +++ /dev/null @@ -1 +0,0 @@ -PRSice* diff --git a/PRSice/2.2.8/README.md b/PRSice/2.2.8/README.md deleted file mode 100755 index f3091a7..0000000 --- a/PRSice/2.2.8/README.md +++ /dev/null @@ -1,56 +0,0 @@ -# Installation - -```bash -## Commands used for installing the software -## Instructions from https://www.prsice.info/compilation/ -curl https://codeload.github.com/choishingwan/PRSice/tar.gz/2.2.8 > PRSice.tar.gz -tar -xvf PRSice.tar.gz -mv PRSice-2* PRSice-local -cd PRSice-local -mkdir build -cd build -cmake ../ -make -cd .. -chmod -R 775 PRSice-local - -## Ignore all downloaded/installed files -echo "PRSice*" > .gitignore - -## Version control files -git add .gitignore -chmod -R 775 README.md -git add README.md -``` - -# Reproducibility - -```bash -## Evaluate the following commands -module list -date -echo "User: ${USER}" -echo "Hostname: ${HOSTNAME}" -``` - -```bash -## copy paste the output from the previous commands -$ module list - -Currently Loaded Modules: - 1) matlab/R2019a 6) COMMUNITY_CENTOS7_DEFAULT_ENV 11) ruby/2.6.4p104 - 2) stata/16 7) JHPCE_CENTOS7_DEFAULT_ENV 12) rmate/1.5.9 - 3) JHPCE_tools/1.0 8) git-status-size/github 13) conda/3-4.6.14 - 4) sge/8.1.9 9) git/2.23.0 14) conda_R/3.6.x - 5) gcc/4.4.7 10) git-lfs/2.8.0 - - - -$ date -Mon May 11 16:01:09 EDT 2020 -$ echo "User: ${USER}" -User: jstolz -$ echo "Hostname: ${HOSTNAME}" -Hostname: compute-092.cm.cluster - -```