diff --git a/ldsc/1.0.1/README.md b/ldsc/1.0.1/README.md index 374b6fd..fa4d390 100755 --- a/ldsc/1.0.1/README.md +++ b/ldsc/1.0.1/README.md @@ -2,10 +2,27 @@ ```bash ## Commands used for installing the software -git clone https://github.com/shz9/ldsc.git + +# Make sure not to rely on user packages +export PYTHONNOUSERSITE="some_value" + +git clone https://github.com/bulik/ldsc.git + +# Use mamba, which will be faster +module load conda/3-23.3.1 +# conda create -n mamba_env -c conda-forge mamba +conda activate mamba_env + +mamba env create -p ldsc_env -f ldsc/environment.yml ## Ignore all downloaded/installed files -echo "ldsc*" >> .gitignore +echo "ldsc*" > .gitignore + +# Set open permissions, except don't allow writing that could corrupt the +# conda environment for everyone +chmod 775 README.md .gitignore . +chmod 775 -R ldsc +chmod 555 -R ldsc_env ## Version control files git add .gitignore @@ -27,14 +44,14 @@ echo "Hostname: ${HOSTNAME}" $ module list Currently Loaded Modules: - 1) matlab/R2019a 5) gcc/4.4.7 - 2) stata/16 6) COMMUNITY_CENTOS7_DEFAULT_ENV - 3) JHPCE_tools/1.0 7) JHPCE_CENTOS7_DEFAULT_ENV - 4) sge/8.1.9 8) python/3.7.3 - -$ date -Thu Mar 12 14:34:13 EDT 2020 + 1) JHPCE_ROCKY9_DEFAULT_ENV 2) JHPCE_tools/3.0 3) conda/3-23.3.1 + + +$ date +Wed Apr 17 03:01:07 PM EDT 2024 +$ echo "User: ${USER}" +User: neagles $ echo "Hostname: ${HOSTNAME}" -Hostname: compute-109.cm.cluster +Hostname: compute-093.cm.cluster ```