From e3c6f32dfacb6f2a2696a6bc43dc17909cd3a575 Mon Sep 17 00:00:00 2001 From: Nick-Eagles Date: Fri, 10 Mar 2023 11:10:13 -0500 Subject: [PATCH] Add a python package and allow others to do the same --- graphst/da29b75/README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/graphst/da29b75/README.md b/graphst/da29b75/README.md index 1ae39f8..8a58987 100755 --- a/graphst/da29b75/README.md +++ b/graphst/da29b75/README.md @@ -24,7 +24,7 @@ pip install torch==1.11.0+cu113 -f https://download.pytorch.org/whl/torch_stable # GraphST and additional dependencies pip install GraphST -pip install numpy pandas scikit-learn scanpy pot +pip install numpy pandas scikit-learn scanpy pot scikit-misc conda deactivate @@ -33,9 +33,9 @@ echo "graphst_env" > .gitignore chmod -R 775 /jhpce/shared/jhpce/libd/graphst -# Remove write permissions on conda environment to prevent accidental 'pip' or -# 'conda' commands from permanently changing the module for all users -chmod -R 755 /jhpce/shared/jhpce/libd/graphst/da29b75/graphst_env +# For now, allow anyone to modify the conda environment (to allow +# 'pip install' if a python package is missing) +chmod -R 777 /jhpce/shared/jhpce/libd/graphst/da29b75/graphst_env ## Version control files git add .gitignore