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Make the organism and annotation options more general #16

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lcolladotor opened this issue Feb 28, 2022 · 0 comments
Open

Make the organism and annotation options more general #16

lcolladotor opened this issue Feb 28, 2022 · 0 comments
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@lcolladotor
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As a note to myself, in our meeting with @ChristopherWilks and @Nick-Eagles today, the idea of using a text file like the homes_index at https://github.com/LieberInstitute/recount3/blob/master/R/project_homes.R#L44 but for the annotation options came up.

Or well, in general, the goal would be to (a) still provide helpful error messages to users when they use the wrong organism/annotation option/etc and (b) make it so the package can work with custom organisms/annotations that users might have generated themselves that are different from the ones we officially support.

@lcolladotor lcolladotor self-assigned this Feb 28, 2022
@lcolladotor lcolladotor moved this to Todo in recount3 plans Nov 30, 2023
@lcolladotor lcolladotor added this to the bioc v3.21 milestone Nov 30, 2023
@lcolladotor lcolladotor added the enhancement New feature or request label Nov 30, 2023
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