diff --git a/workflows/phaseimpute/main.nf b/workflows/phaseimpute/main.nf index eb4de3bf..fb633f42 100644 --- a/workflows/phaseimpute/main.nf +++ b/workflows/phaseimpute/main.nf @@ -153,7 +153,7 @@ workflow PHASEIMPUTE { // Phase panel with tool of choice (e.g. SHAPEIT5) if (params.phased == false) { VCF_PHASE_SHAPEIT5( - VCF_NORMALIZE_BCFTOOLS.out.vcf_tbi.combine([]), + VCF_NORMALIZE_BCFTOOLS.out.vcf_tbi.combine(Channel.of([[]])), ch_region, [[],[],[]], [[],[],[]],