From fc11a1c3139f6d45ccc2e91e608d1f7b28929432 Mon Sep 17 00:00:00 2001 From: Jason Kwong Date: Thu, 23 Feb 2017 00:18:24 +1100 Subject: [PATCH] Added porB sequence typing --- meningotype/meningotype.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/meningotype/meningotype.py b/meningotype/meningotype.py index 24921a0..a0cb8b5 100755 --- a/meningotype/meningotype.py +++ b/meningotype/meningotype.py @@ -22,7 +22,7 @@ from pkg_resources import resource_string, resource_filename # Import local modules -import nmen, menwy, ctrA, porB +import nmen, menwy, ctrA, porB, finetype ###### Script globals ########################################################## @@ -273,7 +273,7 @@ def bxTYPE(f, bxPRIMERS, fHbpDB, NHBADB, NadADB): return set(fHbpCOUNT), set(NHBACOUNT), set(NadACOUNT) def porBTYPE(f, blastdb): - porB_result = porB.porBBLAST(f, blastdb) + porB_result = finetype.porBBLAST(f, blastdb) porBCOUNT = porB_result[2] porBSEQS.append(porB_result[5]) return porBCOUNT