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Average T2* maps across runs #10

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tsalo opened this issue Sep 22, 2024 · 4 comments
Open

Average T2* maps across runs #10

tsalo opened this issue Sep 22, 2024 · 4 comments
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enhancement New feature or request

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@tsalo
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tsalo commented Sep 22, 2024

I was thinking we could average the T2* maps across any runs before running tedana. It probably won't have much of an effect, but could still improve results (both optcom and ICA).

@tsalo
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tsalo commented Sep 22, 2024

Maybe we weight by the RMSE or length of the runs or something?

@handwerkerd
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This sounds like it would combined well with temporal concatenation of runs as discussed here ME-ICA/tedana#1133 (comment) It's already possible for someone to provide their own T2* map, but, if we allow users to input multiple runs, then the fit could be averaged across all voxels in all runs in a single step.

@tsalo
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tsalo commented Sep 23, 2024

Since this is a BIDS App, it will automatically process all runs from a given subject/session, so it shouldn't be an issue to aggregate T2* maps across runs.

@tsalo
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tsalo commented Oct 6, 2024

Random thought- We'll need to normalize to a shared space (anatomical space maybe?) before we average the maps across runs.

@tsalo tsalo added the enhancement New feature or request label Oct 6, 2024
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