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<h1>tedana February 2021 Update</h1>
Since our late December newsletter, we have created a new stable release available on PyPI!
You can upgrade your local installation to the latest 0.0.9 version by running
<xmp>pip install -U tedana</xmp>
We encourage everyone to go and check it out, as it includes many new bug fixes, improvements, and breaking changes.
<h2>New Contributors</h2>
We are excited to welcome three new contributors since our last newsletter: M. Versluis, Z. Ahmed, and A. Khojandi!
Thanks to all of our contributors for their continued input and help in creating tedana.
The community has now grown to 20 contributors, and we always look forward to seeing more new faces!
If you’re not sure where to start, please feel free to open an issue or join our next
<a href="https://tedana.readthedocs.io/en/latest/developing.html?highlight=developer%20call#monthly-developer-calls">monthly developer's call</a>.
<h2>Governance Updates</h2>
We have recently overhauled our governance structure, moving from a Benevolent-Dictator-for-Life (BDFL) model to a steering committee structure.
We have also implemented specific maintainer roles to better track project leadership, and we encourage contributors to self-describe their work on tedana in the new
<a href="https://github.com/ME-ICA/tedana/blob/main/contributions.md">contributions description file</a>.
You can learn more about our new governance structure and current project leadership in
<a href="https://tedana.readthedocs.io/en/latest/governance.html">our documentation</a>.
We encourage any community members who are interested in taking a more active role in tedana to open an issue and add themselves as maintainers!
<h2>Code Enhancements</h2>
<ul>
<li>New interactive reports!
Check them out!
User-facing documentation is available
<a href="https://tedana.readthedocs.io/en/latest/reporting.html">here</a>.
You can also see two example reports
<a href="https://me-ica.github.io/tedana-ohbm-2020/">here</a>.
</li>
<li>If no BOLD-like ICA components are found, tedana will now re-run the ICA step with a new seed.</li>
<li>Documentation has been improved both on readthedocs and inside of docstrings.</li>
<li>Added new documentation for multi-echo acquisition on Philips scanners <a href="https://tedana.readthedocs.io/en/latest/acquisition.html#philips">here</a>.</li>
<li>T2* values now have a nonzero floor to prevent divide-by-zero errors during optimal combination.</li>
<li>When opening an issue, there is now a NeuroStars link for more general questions.</li>
<li>Added variance-explained method for PCA.</li>
</ul>
<h2>Breaking Changes</h2>
<ul>
<li> The main branch is now "main" instead of "master."</li>
<li>"T1c" is now "mir" for minimum image regression.</li>
<li>For the "--manacc" option, you should supply a list of integers instead of a comma-separated string.</li>
</ul>
<h2>Bug Fixes</h2>
<ul>
<li>Windows path support added for our testing suite.</li>
</ul>
<h2>Full Commit History Since 0.0.9a1</h2>
54f65eb Update acquisition.rst to include information for Philips scanners (#579) by mjversluis on Thu Jul 9 20:16:37 2020 +0200<br>
03694bd docs: add mjversluis as a contributor (#580) by allcontributors[bot] on Thu Jul 9 14:48:10 2020 -0400<br>
ddaa4d5 [DOC] multi-echo reports (#457) by Elizabeth DuPre on Sun Jul 12 21:17:18 2020 -0400<br>
5ccc4f2 [DOC] Include [all] in developer setup install guidelines (#572) by Taylor Salo on Fri Jul 17 18:16:16 2020 -0400<br>
06de703 docs: add mvaziri as a contributor (#587) by allcontributors[bot] on Sun Jul 19 13:34:52 2020 -0400<br>
d933592 [FIX] Add non-zero floor to T2* values (#585) by Taylor Salo on Sun Aug 2 13:56:31 2020 -0400<br>
387db31 [TST] Show logging output during integration tests (#588) by Taylor Salo on Fri Aug 7 13:26:06 2020 -0400<br>
75bdda8 [MAINT] Add workflow to autodeploy to PyPi (#568) by Taylor Salo on Fri Aug 21 10:59:04 2020 -0400<br>
150b5c0 [DOC] Use README as long_desc (#595) by Elizabeth DuPre on Wed Aug 26 11:25:53 2020 -0400<br>
3374356 [ENH] Use list of ints for manacc instead of comma-separated string (#598) by Taylor Salo on Fri Sep 18 16:18:55 2020 -0400<br>
b0b81bc [DOC] Miscellaneous improvements to documentation (#575) by Taylor Salo on Mon Sep 21 22:58:52 2020 -0400<br>
e4e3e26 [DOC] Added link for tedana NeuroStars tag. (#608) by aykhojandi on Mon Sep 28 12:00:44 2020 -0400<br>
5f64cbc docs: add aykhojandi as a contributor (#610) by allcontributors[bot] on Mon Oct 5 10:36:31 2020 -0400<br>
65dda07 [DOC] Rewrite new PCA section (#613) by Eneko Uruñuela on Mon Oct 19 19:13:37 2020 +0200<br>
0eaa3ba [DOC] Reporting documentation (#465) by Javier Gonzalez-Castillo on Mon Oct 19 18:18:21 2020 -0400<br>
005e9d9 [REF] Rename T1c to "minimum image regression" (#609) by Taylor Salo on Mon Oct 19 18:34:25 2020 -0400<br>
91b0379 docs: add smoia as a contributor (#616) by allcontributors[bot] on Tue Oct 20 13:50:51 2020 -0400<br>
61af3f1 [MAINT] Add all contributors to Zenodo file (#614) by Taylor Salo on Mon Nov 2 21:13:44 2020 -0500<br>
c121195 Add diagonal reference line to kappa/rho plot (#625) by Zaki A on Mon Dec 7 14:18:38 2020 -0600<br>
b4a58c8 Allow CI for all-contributors (#627) by Joshua Teves on Mon Dec 7 16:54:08 2020 -0500<br>
23d58f4 [DOC] add notZaki as a contributor (#630) by allcontributors[bot] on Mon Dec 7 17:41:46 2020 -0500<br>
45e5ad7 [DOC] Governance update (#615) by Dan Handwerker on Tue Dec 8 09:49:00 2020 -0500<br>
5369e1d [FIX] Show logs in re-runs (#637) by Zaki A on Mon Jan 4 08:55:56 2021 -0600<br>
4ecdf4b [DOC] Add docstring to fit_loglinear (#646) by Taylor Salo on Fri Jan 15 11:53:00 2021 -0500<br>
63070e2 [FIX] Eliminate duplicate lines in logs (#645) by Taylor Salo on Fri Jan 15 11:53:41 2021 -0500<br>
dae9f20 [DOC] Add NeuroStars question link (#651) by Taylor Salo on Sat Jan 16 10:13:52 2021 -0500<br>
6bfb6fa [DOC] Log count of floored voxels in T2* estimation (#656) by Taylor Salo on Fri Jan 22 17:26:27 2021 -0500<br>
82bda7c [ENH] Implement variance explained threshold-based PCA option (#658) by Taylor Salo on Fri Jan 22 17:26:50 2021 -0500<br>
1e7d42f [DOC] Clarify role of components in output (#660) by Zaki A on Tue Jan 26 09:04:46 2021 -0600<br>
dd513ae docs: add notZaki as a contributor (#661) by allcontributors[bot] on Tue Jan 26 10:05:12 2021 -0500<br>
f422a2f [REF] Replace deprecated get_data() with get_fdata() (#664) by Zaki A on Wed Jan 27 09:05:47 2021 -0600<br>
74b922d [ENH] Add threshold argument to make_adaptive_mask (#635) by Taylor Salo on Wed Jan 27 17:28:53 2021 -0500<br>
cd59211 [ENH] Add ability to re-run ICA when no BOLD components are found (#663) by Taylor Salo on Thu Jan 28 10:11:52 2021 -0500<br>
ca7e145 [ENH] Allow tedpca argument to be a float inside a string (#665) by Zaki A on Thu Jan 28 13:33:24 2021 -0600<br>
65a285d [REF] Replaces master with main where possible (#667) by Joshua Teves on Mon Feb 1 18:57:35 2021 -0500<br>
197513d [DOC] Starts contribution page (#624) by Joshua Teves on Tue Feb 2 09:36:40 2021 -0500<br>
9516608 [MAINT] Add new contributors to Zenodo file (#671) by Taylor Salo on Wed Feb 3 13:32:54 2021 -0500<br>
14be852 [MAINT] Move long description logic from info.py to setup.py (#670) by Zaki A on Wed Feb 3 13:41:41 2021 -0600<br>
f8802df [FIX] Normalize data to zero mean and unit variance before dimension estimation (#636) by Zaki A on Fri Feb 5 09:22:26 2021 -0600<br>
08f6a87 [MAINT] Support Windows' paths; Update zenodo & contributor count (#672) by Zaki A on Fri Feb 5 12:26:35 2021 -0600<br>