Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

SurvSHAP model freezes for new data #4

Closed
Addicted-to-coding opened this issue Nov 21, 2022 · 1 comment
Closed

SurvSHAP model freezes for new data #4

Addicted-to-coding opened this issue Nov 21, 2022 · 1 comment

Comments

@Addicted-to-coding
Copy link

Hi,
I am trying to run SurvSHAP on my test dataset of shape 200x8 and the model ends up freezing without any error messages

  1. I was able to reproduce the results of the paper by running https://github.com/MI2DataLab/survshap/blob/main/exp3.ipynb

  2. My dataset is very similar to the dataset used in epx3. Using my dataset, I am able to generate the integrated brier scores of the rsf pipeline

  3. However, when I try to use the SurvivalModelExplainer and ModelSurvShap to generate explanations, I get the following progress bar that does not run. I have tested this over the course of 10 hours and there is no progress, as well as no error message
    image

  4. As mentioned earlier, my dataset is similar to the default dataset used in exp3.ipynb, which runs just fine.
    Can you please help out with this?

@hbaniecki
Copy link
Member

Hi, thanks for reproducing our results!

I guess we are unable to debug such a freeze without a reproducible example (demo with code/data).

Closing and moving the discussion to #5

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants