From fa027a37293cc550f0233e9933dd3348e86ce70e Mon Sep 17 00:00:00 2001
From: MLDataAnalytics <128093454+MLDataAnalytics@users.noreply.github.com>
Date: Sat, 10 Aug 2024 08:44:52 -0400
Subject: [PATCH 1/2] Update conf.py

---
 docs/conf.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/docs/conf.py b/docs/conf.py
index 62f06f3..1fcb60b 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -27,7 +27,8 @@
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
-extensions = ["myst_parser"]
+extensions = ["myst_parser",
+             "sphinx.ext.autodoc"]
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']

From f0453c93943dbf0ce78bb0dc3af20f05191f1884 Mon Sep 17 00:00:00 2001
From: MLDataAnalytics <128093454+MLDataAnalytics@users.noreply.github.com>
Date: Sat, 10 Aug 2024 08:58:16 -0400
Subject: [PATCH 2/2] Update conf.py

---
 docs/conf.py | 71 +++++++++++++++++++++++++++++++++++++++++++++-------
 1 file changed, 62 insertions(+), 9 deletions(-)

diff --git a/docs/conf.py b/docs/conf.py
index 1fcb60b..6b3b65a 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -10,16 +10,17 @@
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 #
-# import os
-# import sys
-# sys.path.insert(0, os.path.abspath('.'))
+import os
+import sys
+sys.path.insert(0, os.path.abspath('..'))
 
 
 # -- Project information -----------------------------------------------------
 
 project = 'pNet'
-copyright = '2024, Yong Fan'
-author = 'Yong Fan'
+copyright = '2024, pNet developers'
+# The full version, including alpha/beta/rc tags
+release = '1.0.1'
 
 
 # -- General configuration ---------------------------------------------------
@@ -27,26 +28,78 @@
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
-extensions = ["myst_parser",
-             "sphinx.ext.autodoc"]
+extensions = ['myst_parser',
+              'sphinx.ext.autodoc',
+              'sphinx.ext.viewcode',
+              'sphinx.ext.napoleon',
+              'sphinx.ext.autosummary',
+              'sphinx.ext.doctest',
+              'sphinx.ext.intersphinx',
+              'sphinx.ext.mathjax',
+              'sphinx.ext.viewcode',
+              'sphinxarg.ext',
+              'sphinx_gallery.gen_gallery',
+              'matplotlib.sphinxext.plot_directive']
+
+# Generate the API documentation when building
+autosummary_generate = True
+autodoc_default_options = {'members': True, 'inherited-members': True}
+numpydoc_show_class_members = False
+autoclass_content = "class"
+
+napoleon_google_docstring = False
+napoleon_numpy_docstring = True
+napoleon_include_init_with_doc = False
+napoleon_include_special_with_doc = False
+napoleon_use_param = True
+napoleon_use_ivar = True
+napoleon_use_rtype = False
+
+napoleon_include_private_with_doc = False
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 
+# The suffix(es) of source filenames.
+source_suffix = '.rst'
+
+# The master toctree document.
+master_doc = 'index'
+
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This pattern also affects html_static_path and html_extra_path.
 exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
 
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
 
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
-#
-html_theme = 'alabaster'
+import sphinx_rtd_theme  # noqa
+html_theme = 'sphinx_rtd_theme'
+html_show_sourcelink = False
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+html_theme_options = {}
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
 html_static_path = ['_static']
+
+# CSS files to include
+html_css_files = ['theme_overrides.css']
+
+# -- Options for HTMLHelp output ---------------------------------------------
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'pNetdoc'
+
+doctest_global_setup = """\
+import numpy as np
+np.random.seed(1234)\
+"""