diff --git a/aligned/compiler/feature_factory.py b/aligned/compiler/feature_factory.py index d604d993..805a5575 100644 --- a/aligned/compiler/feature_factory.py +++ b/aligned/compiler/feature_factory.py @@ -1237,6 +1237,13 @@ def split(self, pattern: str) -> String: feature.transformation = Split(pattern, self) return feature + def format_string(self, features: list[FeatureFactory], format: str) -> String: + from aligned.compiler.transformation_factory import FormatString + + feature = String() + feature.transformation = FormatString(format, features) + return feature + def replace(self, values: dict[str, str]) -> String: from aligned.compiler.transformation_factory import ReplaceFactory diff --git a/aligned/compiler/transformation_factory.py b/aligned/compiler/transformation_factory.py index e7924933..82f04ce4 100644 --- a/aligned/compiler/transformation_factory.py +++ b/aligned/compiler/transformation_factory.py @@ -1030,3 +1030,19 @@ def compile(self) -> Transformation: return LoadFeature( {key: value.name for key, value in self.entities.items()}, self.feature, explode_key ) + + +@dataclass +class FormatString(TransformationFactory): + + format: str + features: list[FeatureFactory] + + @property + def using_features(self) -> list[FeatureFactory]: + return self.features + + def compile(self) -> Transformation: + from aligned.schemas.transformation import FormatStringTransformation + + return FormatStringTransformation(self.format, [feature.name for feature in self.features]) diff --git a/aligned/exposed_model/interface.py b/aligned/exposed_model/interface.py index 034866bb..7782579f 100644 --- a/aligned/exposed_model/interface.py +++ b/aligned/exposed_model/interface.py @@ -24,6 +24,7 @@ class PredictorFactory: def __init__(self) -> None: from aligned.exposed_model.mlflow import MLFlowServer, InMemMLFlowAlias from aligned.exposed_model.ollama import OllamaGeneratePredictor, OllamaEmbeddingPredictor + from aligned.exposed_model.sentence_transformer import SentenceTransformerPredictor self.supported_predictors = {} @@ -36,6 +37,7 @@ def __init__(self) -> None: ShadowModel, ABTestModel, DillPredictor, + SentenceTransformerPredictor, ] for predictor in types: self.supported_predictors[predictor.model_type] = predictor diff --git a/aligned/exposed_model/sentence_transformer.py b/aligned/exposed_model/sentence_transformer.py new file mode 100644 index 00000000..5abfc2a9 --- /dev/null +++ b/aligned/exposed_model/sentence_transformer.py @@ -0,0 +1,269 @@ +import logging +import polars as pl +from dataclasses import dataclass +from datetime import datetime, timezone, timedelta + +from aligned.compiler.feature_factory import ( + CouldBeModelVersion, + Embedding, + Entity, + EventTimestamp, + FeatureFactory, + FeatureReferencable, + ModelVersion, + String, +) +from aligned.data_source.batch_data_source import CodableBatchDataSource +from aligned.feature_store import ModelFeatureStore + +from aligned.exposed_model.interface import ExposedModel, PromptModel +from aligned.retrival_job import RetrivalJob +from aligned.schemas.feature import Feature, FeatureReference + + +logger = logging.getLogger(__name__) + + +@dataclass +class SentenceTransformerPredictor(ExposedModel, PromptModel): + + model_name: str + embedding_name: str + + prompt_template: str + features_to_load: list[FeatureReference] + + precomputed_prompt_key_overwrite: str + + model_type: str = 'sent_tran' + + @property + def precomputed_prompt_key(self) -> str | None: + return self.precomputed_prompt_key_overwrite + + @property + def exposed_at_url(self) -> str | None: + return None + + def prompt_template_hash(self) -> str: + from hashlib import sha256 + + return sha256(self.prompt_template.encode(), usedforsecurity=False).hexdigest() + + async def potential_drift_from_model(self, old_model: ExposedModel) -> str | None: + """ + Checks if a change in model can lead to a potential distribution shift. + + Returns: + str: A message explaining the potential drift. + """ + if not isinstance(old_model, SentenceTransformerPredictor): + return None + + changes = '' + if old_model.model_name != self.model_name: + changes += f"Model name changed from `{old_model.model_name}` to `{self.model_name}`.\n" + + if old_model.prompt_template != self.prompt_template: + changes += ( + f"Prompt template changed from `{old_model.prompt_template}` to `{self.prompt_template}`.\n" + ) + + if changes: + return changes + else: + return None + + @property + def as_markdown(self) -> str: + return f"""Creating an embedding through a sentence transformer. + +This will use the model: `{self.model_name}` to generate the embeddings.""" + + async def needed_features(self, store: ModelFeatureStore) -> list[FeatureReference]: + return self.features_to_load + + async def needed_entities(self, store: ModelFeatureStore) -> set[Feature]: + return store.store.requests_for_features(self.features_to_load).request_result.entities + + async def run_polars(self, values: RetrivalJob, store: ModelFeatureStore) -> pl.DataFrame: + import polars as pl + from sentence_transformers import SentenceTransformer + + model = SentenceTransformer(model_name_or_path=self.model_name) + entities = await values.to_polars() + + prompts: list[str] = [] + + if self.precomputed_prompt_key_overwrite in entities.columns: + prompts = entities[self.precomputed_prompt_key_overwrite].to_list() + else: + missing_cols = {feat.name for feat in self.features_to_load} - set(entities.columns) + if missing_cols: + entities = await store.store.features_for(values, self.features_to_load).to_polars() + + for index, value in enumerate(entities.iter_rows(named=True)): + logger.info(f"Processing row {index + 1}/{len(prompts)}") + + prompt = self.prompt_template.format(**value) + prompts.append(prompt) + + entities = entities.with_columns( + pl.Series(name=self.precomputed_prompt_key_overwrite, values=prompts) + ) + + responses = model.encode(prompts) + + pred_view = store.model.predictions_view + if pred_view.model_version_column: + model_version = f"{self.prompt_template_hash()} -> {self.model_name}" + model_version_name = pred_view.model_version_column.name + entities = entities.with_columns(pl.lit(model_version).alias(model_version_name)) + + if pred_view.event_timestamp: + new_et = pred_view.event_timestamp.name + existing_et = values.request_result.event_timestamp + need_to_add_et = new_et not in entities.columns + + if existing_et and need_to_add_et and existing_et in entities.columns: + logger.info(f"Using existing event timestamp `{existing_et}` as new timestamp.") + entities = entities.with_columns(pl.col(existing_et).alias(new_et)) + elif need_to_add_et: + logger.info('No event timestamp using now as the timestamp.') + entities = entities.with_columns( + pl.lit(datetime.now(tz=timezone.utc)).alias(pred_view.event_timestamp.name) + ) + + return entities.hstack([pl.Series(name=self.embedding_name, values=responses)]) + + +def sentence_transform_feature( + feature: FeatureReferencable, + model: str, + output_name: str, + precomputed_prompt_key: str = 'full_prompt', +) -> 'SentenceTransformerPredictor': + + return SentenceTransformerPredictor( + model_name=model, + embedding_name=output_name, + prompt_template=f"{{{feature.feature_reference().name}}}", + features_to_load=[feature.feature_reference()], + precomputed_prompt_key_overwrite=precomputed_prompt_key, + ) + + +def sentence_transform_prompt( + model: str, + features: list[FeatureReferencable], + prompt_template: str, + output_name: str, + precomputed_prompt_key: str = 'full_prompt', +) -> 'SentenceTransformerPredictor': + + return SentenceTransformerPredictor( + model_name=model, + embedding_name=output_name, + prompt_template=prompt_template, + features_to_load=[feature.feature_reference() for feature in features], + precomputed_prompt_key_overwrite=precomputed_prompt_key, + ) + + +def sentence_transformer_contract( + input: FeatureReferencable | list[FeatureReferencable], + contract_name: str, + model: str, + entities: list[FeatureFactory] | FeatureFactory, + embedding_size: int, + prompt_template: str | None = None, + output_source: CodableBatchDataSource | None = None, + contacts: list[str] | None = None, + tags: list[str] | None = None, + precomputed_prompt_key: str = 'full_prompt', + model_version_field: FeatureFactory | None = None, + additional_metadata: list[FeatureFactory] | None = None, + acceptable_freshness: timedelta | None = None, + unacceptable_freshness: timedelta | None = None, +): + from aligned import model_contract, FeatureInputVersions + + if isinstance(input, FeatureReferencable) and prompt_template is None: + ref = input.feature_reference() + prompt_template = f"{{{ref.name}}}" + + if prompt_template is None: + raise ValueError('prompt_template must be provided if input is a list') + + if not isinstance(input, list): + input = [input] + + @model_contract( + name=contract_name, + description=f'Contract for generating embeddings using the {model} through Ollama', + input_features=FeatureInputVersions( + default_version='default', versions={'default': input} # type: ignore + ), + exposed_model=sentence_transform_prompt( + model=model, + features=input, + prompt_template=prompt_template, + output_name='embedding', + precomputed_prompt_key=precomputed_prompt_key, + ), + output_source=output_source, + contacts=contacts, + tags=tags, + acceptable_freshness=acceptable_freshness, + unacceptable_freshness=unacceptable_freshness, + ) + class ScentenceTransformerContract: + updated_at = EventTimestamp() + embedding = Embedding(embedding_size=embedding_size) + full_prompt = String().with_name(precomputed_prompt_key) + + if not isinstance(entities, list): + entities = [entities] + + for entity in entities: + if isinstance(entity, Entity): + feature = entity._dtype.copy_type() + else: + feature = entity.copy_type() + + new_entity = Entity(feature) + + feature._name = entity.name + new_entity._name = entity.name + + setattr(ScentenceTransformerContract.contract, entity.name, new_entity) + + def add_feature(feature: FeatureFactory) -> None: + + assert feature._name, ( + 'Trying to add a feature without any name. ' + 'Consider using the `.with_name(...)` to manually set it.' + ) + if feature._location is None: + setattr(ScentenceTransformerContract.contract, feature.name, feature) + return + + feature_copy = feature.copy_type() + feature_copy._name = feature._name + feature_copy.constraints = feature.constraints.copy() if feature.constraints else None + setattr(ScentenceTransformerContract.contract, feature_copy.name, feature_copy) + + if model_version_field is not None: + if isinstance(model_version_field, ModelVersion): + add_feature(model_version_field) + elif isinstance(model_version_field, CouldBeModelVersion): + add_feature(model_version_field.as_model_version().with_name(model_version_field.name)) + else: + raise ValueError(f"Feature {model_version_field} can not be a model version.") + else: + add_feature(String().as_model_version().with_name('model_version')) + + for feature in additional_metadata or []: + add_feature(feature) + + return ScentenceTransformerContract # type: ignore diff --git a/aligned/jobs/tests/test_combined_job.py b/aligned/jobs/tests/test_combined_job.py index d7b63a60..2feeca5f 100644 --- a/aligned/jobs/tests/test_combined_job.py +++ b/aligned/jobs/tests/test_combined_job.py @@ -52,6 +52,8 @@ def append_someting(self, df: pd.DataFrame, store: ContractStore) -> pd.Series: def using_row(self, row: dict, store: ContractStore) -> str: return row['query'] + ' something' + new_format = String().format_string([query, contains_mr], format='Hello {contains_mr} - {query}') + @transform_row(using_features=[embedding], return_type=List(String())) async def related_entities(self, row: dict, store: ContractStore) -> list[str]: df = ( @@ -59,7 +61,6 @@ async def related_entities(self, row: dict, store: ContractStore) -> list[str]: .nearest_n_to(entities=[row], number_of_records=2) .to_polars() ) - print(df) return df['vec_id'].to_list() not_contains = contains_something.not_equals(True) @@ -75,7 +76,6 @@ async def test_feature_view_without_entity(): {'query': ['Hello', 'Hello mr'], 'embedding': [[1, 3], [0, 10]]} ) df = await job.to_polars() - print(df) assert df['contains_mr'].sum() == 1 diff --git a/aligned/lazy_imports.py b/aligned/lazy_imports.py index c7e987e4..867a2a2b 100644 --- a/aligned/lazy_imports.py +++ b/aligned/lazy_imports.py @@ -132,10 +132,13 @@ def _lazy_import(module_name: str) -> tuple[ModuleType, bool]: _PANDAS_AVAILABLE = True _PANDERA_AVAILABLE = True +_SENTENCE_TRANSFORMERS = True if TYPE_CHECKING: import pandas import pandera + import sentence_transformers else: pandas, _PANDAS_AVAILABLE = _lazy_import('pandas') pandera, _PANDERA_AVAILABLE = _lazy_import('pandera') + sentence_transformers, _SENTENCE_TRANSFORMERS = _lazy_import('sentence_transformers') diff --git a/aligned/schemas/transformation.py b/aligned/schemas/transformation.py index e028dd69..2f489eec 100644 --- a/aligned/schemas/transformation.py +++ b/aligned/schemas/transformation.py @@ -243,6 +243,8 @@ def __init__(self) -> None: ArrayAtIndex, OllamaEmbedding, PolarsMapRowTransformation, + LoadFeature, + FormatStringTransformation, ]: self.add(tran_type) @@ -2535,6 +2537,7 @@ class Split(Transformation): key: str separator: str + name = 'split' async def transform_pandas(self, df: pd.DataFrame, store: ContractStore) -> pd.Series: return df[self.key].str.split(self.separator) @@ -2551,6 +2554,7 @@ class LoadFeature(Transformation): entities: dict[str, str] feature: FeatureReference explode_key: str | None + name = 'load_feature' async def transform_pandas(self, df: pd.DataFrame, store: ContractStore) -> pd.Series: @@ -2589,3 +2593,31 @@ async def transform_polars( values = values.select(pl.col(self.feature.name).alias(alias)) return pl.concat([df, values.lazy()], how='horizontal') + + +@dataclass +class FormatStringTransformation(Transformation): + + format: str + keys: list[str] + name = 'format_string' + + async def transform_pandas(self, df: pd.DataFrame, store: ContractStore) -> pd.Series: + values = [] + for row in df[self.keys].to_dict(orient='records'): # type: ignore + values.append(self.format.format(**row)) + + return pd.Series(values) + + async def transform_polars( + self, df: pl.LazyFrame, alias: str, store: ContractStore + ) -> pl.LazyFrame | pl.Expr: + + polars_df = df.collect() + new_rows = [] + + for row in polars_df.to_dicts(): + row[alias] = self.format.format(**row) + new_rows.append(row) + + return pl.DataFrame(new_rows).lazy() diff --git a/poetry.lock b/poetry.lock index 64f76b11..9b5e4b8a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -610,7 +610,7 @@ pycparser = "*" name = "charset-normalizer" version = "3.3.2" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -optional = true +optional = false python-versions = ">=3.7.0" files = [ {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"}, @@ -1092,6 +1092,22 @@ typing-extensions = ">=4.5.0" [package.extras] all = ["email-validator (>=2.0.0)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=2.11.2)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.5)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"] +[[package]] +name = "filelock" +version = "3.16.1" +description = "A platform independent file lock." +optional = false +python-versions = ">=3.8" +files = [ + {file = "filelock-3.16.1-py3-none-any.whl", hash = "sha256:2082e5703d51fbf98ea75855d9d5527e33d8ff23099bec374a134febee6946b0"}, + {file = "filelock-3.16.1.tar.gz", hash = "sha256:c249fbfcd5db47e5e2d6d62198e565475ee65e4831e2561c8e313fa7eb961435"}, +] + +[package.extras] +docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4.1)"] +testing = ["covdefaults (>=2.3)", "coverage (>=7.6.1)", "diff-cover (>=9.2)", "pytest (>=8.3.3)", "pytest-asyncio (>=0.24)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-timeout (>=2.3.1)", "virtualenv (>=20.26.4)"] +typing = ["typing-extensions (>=4.12.2)"] + [[package]] name = "flask" version = "3.0.3" @@ -1283,7 +1299,7 @@ files = [ name = "fsspec" version = "2024.9.0" description = "File-system specification" -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "fsspec-2024.9.0-py3-none-any.whl", hash = "sha256:a0947d552d8a6efa72cc2c730b12c41d043509156966cca4fb157b0f2a0c574b"}, @@ -1575,6 +1591,40 @@ http2 = ["h2 (>=3,<5)"] socks = ["socksio (==1.*)"] zstd = ["zstandard (>=0.18.0)"] +[[package]] +name = "huggingface-hub" +version = "0.25.2" +description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" +optional = false +python-versions = ">=3.8.0" +files = [ + {file = "huggingface_hub-0.25.2-py3-none-any.whl", hash = "sha256:1897caf88ce7f97fe0110603d8f66ac264e3ba6accdf30cd66cc0fed5282ad25"}, + {file = "huggingface_hub-0.25.2.tar.gz", hash = "sha256:a1014ea111a5f40ccd23f7f7ba8ac46e20fa3b658ced1f86a00c75c06ec6423c"}, +] + +[package.dependencies] +filelock = "*" +fsspec = ">=2023.5.0" +packaging = ">=20.9" +pyyaml = ">=5.1" +requests = "*" +tqdm = ">=4.42.1" +typing-extensions = ">=3.7.4.3" + +[package.extras] +all = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "fastapi", "gradio", "jedi", "minijinja (>=1.0)", "mypy (==1.5.1)", "numpy", "pytest (>=8.1.1,<8.2.2)", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-mock", "pytest-rerunfailures", "pytest-vcr", "pytest-xdist", "ruff (>=0.5.0)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] +cli = ["InquirerPy (==0.3.4)"] +dev = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "fastapi", "gradio", "jedi", "minijinja (>=1.0)", "mypy (==1.5.1)", "numpy", "pytest (>=8.1.1,<8.2.2)", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-mock", "pytest-rerunfailures", "pytest-vcr", "pytest-xdist", "ruff (>=0.5.0)", "soundfile", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] +fastai = ["fastai (>=2.4)", "fastcore (>=1.3.27)", "toml"] +hf-transfer = ["hf-transfer (>=0.1.4)"] +inference = ["aiohttp", "minijinja (>=1.0)"] +quality = ["mypy (==1.5.1)", "ruff (>=0.5.0)"] +tensorflow = ["graphviz", "pydot", "tensorflow"] +tensorflow-testing = ["keras (<3.0)", "tensorflow"] +testing = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "fastapi", "gradio", "jedi", "minijinja (>=1.0)", "numpy", "pytest (>=8.1.1,<8.2.2)", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-mock", "pytest-rerunfailures", "pytest-vcr", "pytest-xdist", "soundfile", "urllib3 (<2.0)"] +torch = ["safetensors[torch]", "torch"] +typing = ["types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)"] + [[package]] name = "idna" version = "3.8" @@ -1659,7 +1709,7 @@ files = [ name = "jinja2" version = "3.1.4" description = "A very fast and expressive template engine." -optional = true +optional = false python-versions = ">=3.7" files = [ {file = "jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"}, @@ -1676,7 +1726,7 @@ i18n = ["Babel (>=2.7)"] name = "joblib" version = "1.4.2" description = "Lightweight pipelining with Python functions" -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "joblib-1.4.2-py3-none-any.whl", hash = "sha256:06d478d5674cbc267e7496a410ee875abd68e4340feff4490bcb7afb88060ae6"}, @@ -1894,7 +1944,7 @@ testing = ["coverage", "pyyaml"] name = "markupsafe" version = "2.1.5" description = "Safely add untrusted strings to HTML/XML markup." -optional = true +optional = false python-versions = ">=3.7" files = [ {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a17a92de5231666cfbe003f0e4b9b3a7ae3afb1ec2845aadc2bacc93ff85febc"}, @@ -2122,6 +2172,23 @@ langchain = ["langchain (>=0.1.0,<=0.2.15)"] sqlserver = ["mlflow-dbstore"] xethub = ["mlflow-xethub"] +[[package]] +name = "mpmath" +version = "1.3.0" +description = "Python library for arbitrary-precision floating-point arithmetic" +optional = false +python-versions = "*" +files = [ + {file = "mpmath-1.3.0-py3-none-any.whl", hash = "sha256:a0b2b9fe80bbcd81a6647ff13108738cfb482d481d826cc0e02f5b35e5c88d2c"}, + {file = "mpmath-1.3.0.tar.gz", hash = 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a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "aligned" -version = "0.0.108" +version = "0.0.109" description = "A data managment and lineage tool for ML applications." authors = ["Mats E. Mollestad "] license = "Apache-2.0" @@ -72,6 +72,7 @@ mlflow = { version = "^2.11.3", optional = true } adlfs = { version = "^2024.4.1", optional = true } lancedb = { version = "^0.8.2", optional = true } deltalake = { version = "^0.18.1", optional = true } +sentence-transformers = { version = "^3.2.0", optional = true } [tool.poetry.extras] aws = ["aioaws", "connectorx"] @@ -88,6 +89,7 @@ azure = ["adlfs"] deltalake = ["deltalake"] lancedb = ["lancedb"] pandas = ["pandas"] +sentence-transformers = ["sentence-transformers"] [tool.poetry.group.dev.dependencies] types-redis = "^4.2.6"