From 950af1636709ce300268e8432272fcebbd0bb9ce Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 15 Nov 2024 23:34:56 -0500 Subject: [PATCH 01/22] change version specs to >=0.x instead of ~0.x meaning is somewhat unclear, and greyskull rejects it --- meta.yaml | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index 368e3849..61850da8 100644 --- a/meta.yaml +++ b/meta.yaml @@ -26,7 +26,7 @@ requirements: - pypng 0.20220715.* - six >=1.16.0 - vectormath >=0.2.0 - - geoh5py >=0.9.1a0.dev0,<0.11.0a0.dev0 + - geoh5py >=0.9.1a.dev,<0.11.0a.dev about: license: MIT diff --git a/poetry.lock b/poetry.lock index 3eb20291..af29bb3f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1152,4 +1152,4 @@ numpy = ">=1.7" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "72cc48eec2e6149606d9df66c2a72bedcfe198896d38e079333cd6ca7144b191" +content-hash = "11a833bc762bbc266e2496a74268ed324e63a541fe70a665b86fe22e160b01d7" diff --git a/pyproject.toml b/pyproject.toml index e69e8548..1f86d3bf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -55,7 +55,7 @@ vectormath = "~0.2.0" ## dependencies from Git repositories #------------------------------------ -geoh5py = {version = "~0.10.0-beta.1", allow-prereleases = true} +geoh5py = {version = ">=0.10.0-beta.1, <0.11.0a.dev", allow-prereleases = true} #geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} #geoh5py = {path = "../geoh5py", develop = true} From 5144bafa6c72686cb4957ade36ab11cdc67fe28b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 15 Nov 2024 23:37:53 -0500 Subject: [PATCH 02/22] align version spec in conda meta and pyproject.toml --- meta.yaml | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/meta.yaml b/meta.yaml index 61850da8..7a77fa4d 100644 --- a/meta.yaml +++ b/meta.yaml @@ -26,7 +26,7 @@ requirements: - pypng 0.20220715.* - six >=1.16.0 - vectormath >=0.2.0 - - geoh5py >=0.9.1a.dev,<0.11.0a.dev + - geoh5py >=0.10.0b1,<0.11.0a.dev about: license: MIT diff --git a/poetry.lock b/poetry.lock index af29bb3f..0a4f63bc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1152,4 +1152,4 @@ numpy = ">=1.7" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "11a833bc762bbc266e2496a74268ed324e63a541fe70a665b86fe22e160b01d7" +content-hash = "3a08f336abb650823de5aef811422f66e733d12e662675b340df37307179cab4" diff --git a/pyproject.toml b/pyproject.toml index 1f86d3bf..c135b46b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -55,7 +55,7 @@ vectormath = "~0.2.0" ## dependencies from Git repositories #------------------------------------ -geoh5py = {version = ">=0.10.0-beta.1, <0.11.0a.dev", allow-prereleases = true} +geoh5py = {version = ">=0.10.0b1, <0.11.0a.dev", allow-prereleases = true} #geoh5py = {git = "https://github.com/MiraGeoscience/geoh5py.git", rev = "release/0.10.0"} #geoh5py = {path = "../geoh5py", develop = true} From 6fba672c55525b0b25fb237dcde581cfd52bb851 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Sun, 17 Nov 2024 21:34:08 -0500 Subject: [PATCH 03/22] minor github workflow job renaming --- .github/workflows/python_deploy_dev.yml | 2 +- .github/workflows/python_deploy_prod.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python_deploy_dev.yml b/.github/workflows/python_deploy_dev.yml index ee32a166..5c681284 100644 --- a/.github/workflows/python_deploy_dev.yml +++ b/.github/workflows/python_deploy_dev.yml @@ -21,7 +21,7 @@ jobs: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-publish: - name: Publish development pypi package (JFrog Artifactory and TestPyPI) + name: Publish development pypi package (JFrog Artifactory, TestPyPI) uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-publish_pypi_package.yml@main with: package-manager: 'poetry' diff --git a/.github/workflows/python_deploy_prod.yml b/.github/workflows/python_deploy_prod.yml index 27c73b97..7813ef40 100644 --- a/.github/workflows/python_deploy_prod.yml +++ b/.github/workflows/python_deploy_prod.yml @@ -33,7 +33,7 @@ jobs: JFROG_ARTIFACTORY_URL: ${{ secrets.JFROG_ARTIFACTORY_URL }} JFROG_ARTIFACTORY_TOKEN: ${{ secrets.JFROG_ARTIFACTORY_TOKEN }} call-workflow-pypi-release: - name: Publish production PyPI package (JFrog Artifactory and PyPI) + name: Publish production PyPI package (JFrog Artifactory, PyPI) if: ${{ github.event_name == 'release' || github.event.inputs.publish-pypi == 'true' }} uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-release_pypi_assets.yml@main with: From 32c9a8779bd60f1c3fca0019c99516a662ae03d2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Sun, 17 Nov 2024 22:42:10 -0500 Subject: [PATCH 04/22] bump version to beta.2 --- README.rst | 2 +- docs/conf.py | 2 +- meta.yaml | 2 +- omf/__init__.py | 2 +- pyproject.toml | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/README.rst b/README.rst index 66e90972..0b07f53b 100644 --- a/README.rst +++ b/README.rst @@ -18,7 +18,7 @@ omf :alt: pytest -Version: 3.3.0-beta.1 +Version: 3.3.0-beta.2 API library for Open Mining Format, a new standard for mining data backed by the `Global Mining Standards & Guidelines Group `_. diff --git a/docs/conf.py b/docs/conf.py index 1475b540..a2ca2f53 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -64,7 +64,7 @@ # The short X.Y version. version = u'3.3.0' # The full version, including alpha/beta/rc tags. -release = u'3.3.0-beta.1' +release = u'3.3.0-beta.2' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/meta.yaml b/meta.yaml index 7a77fa4d..b56a2170 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "mira-omf" %} -{% set version = "3.3.0b1" %} +{% set version = "3.3.0b2" %} package: name: {{ name|lower }} diff --git a/omf/__init__.py b/omf/__init__.py index 97f1cdeb..ab041f45 100644 --- a/omf/__init__.py +++ b/omf/__init__.py @@ -30,7 +30,7 @@ from .volume import VolumeElement, VolumeGridGeometry -__version__ = "3.3.0-beta.1" +__version__ = "3.3.0-beta.2" __author__ = "Global Mining Standards and Guidelines Group" __license__ = "MIT License" __copyright__ = "Copyright 2017 Global Mining Standards and Guidelines Group" diff --git a/pyproject.toml b/pyproject.toml index c135b46b..9c2880b5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "mira-omf" -version = "3.3.0-beta.1" +version = "3.3.0-beta.2" description = "API Library for Open Mining Format" license = "MIT" authors = [ From 5c4198a41c040796bbbc29cf1ef8d3328576fee7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Tue, 19 Nov 2024 12:39:16 -0500 Subject: [PATCH 05/22] do not use ~0.x in version constraints that semantic is ambiguous and not supported by greyskull --- poetry.lock | 2 +- pyproject.toml | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0a4f63bc..a5da352d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1152,4 +1152,4 @@ numpy = ">=1.7" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "3a08f336abb650823de5aef811422f66e733d12e662675b340df37307179cab4" +content-hash = "220bd5a8f23bd8b20867fb89ca2bc5af2447b06a110bdde45047db9dcc7542a6" diff --git a/pyproject.toml b/pyproject.toml index 9c2880b5..c0ff68f4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,10 +48,10 @@ omf_to_geoh5 = 'omf.scripts.omf_to_geoh5:main' python = "^3.10" numpy = "~1.26.0" # also in geoh5py -properties = "~0.6.0" +properties = "0.6.*" pypng = "^0.20220715" six = "^1.16" -vectormath = "~0.2.0" +vectormath = "0.2.*" ## dependencies from Git repositories #------------------------------------ From 398a7d54094a86e872da00288c89dd8ec0e9e792 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Wed, 20 Nov 2024 01:01:12 -0500 Subject: [PATCH 06/22] [GEOPY-1860] do not include top level files in wheels According to Poetry doc: When a wheel is installed, its includes are unpacked straight into the site-packages directory. Pay attention to include top level files and directories with common names like CHANGELOG.md, LICENSE, tests or docs only in sdists and not in wheels. --- pyproject.toml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index c0ff68f4..0b7f64b0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,12 +32,12 @@ packages = [ ] include = [ - { path = "COPYING", format = ["sdist", "wheel"] }, - { path = "COPYING.LESSER", format = ["sdist", "wheel"] }, - { path = "LICENSE", format = ["sdist", "wheel"] }, - { path = "README.rst", format = ["sdist", "wheel"] }, - { path = "THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, - { path = "docs/**/THIRD_PARTY_SOFTWARE.rst", format = ["sdist", "wheel"] }, + { path = "COPYING" }, + { path = "COPYING.LESSER" }, + { path = "LICENSE" }, + { path = "README.rst" }, + { path = "THIRD_PARTY_SOFTWARE.rst" }, + { path = "docs/**/THIRD_PARTY_SOFTWARE.rst" }, ] [tool.poetry.scripts] From 023ccfb85af49bc444cb75e3e433adaafe651947 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 28 Nov 2024 22:17:03 -0500 Subject: [PATCH 07/22] fix URL to readthedocs --- README.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.rst b/README.rst index 0b07f53b..672e7de0 100644 --- a/README.rst +++ b/README.rst @@ -63,7 +63,7 @@ This library makes use of the `properties `_. -Connection to the geoh5 format makes use of `geoh5py `_ +Connection to the geoh5 format makes use of `geoh5py `_ publicly supported by `Mira Geoscience `_ Installation From 7a628b51cc167db829cf726cf23353ad33387395 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 28 Nov 2024 22:17:23 -0500 Subject: [PATCH 08/22] in conda recipe, allow for Python 3.* --- meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/meta.yaml b/meta.yaml index b56a2170..d32bc215 100644 --- a/meta.yaml +++ b/meta.yaml @@ -15,7 +15,7 @@ build: requirements: host: - - python >=3.10.0,<3.11 + - python >=3.10.0,<4.0.0 - poetry-core >=1.0.0 - setuptools - pip From d9d111bb2144181590245951430df922f1cac7af Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 17 Dec 2024 09:31:26 -0500 Subject: [PATCH 09/22] [DEVOPS-540] Add a version consistency test --- tests/version_test.py | 24 ++++++++++++++++++++++-- 1 file changed, 22 insertions(+), 2 deletions(-) diff --git a/tests/version_test.py b/tests/version_test.py index fef69d24..6f7c3725 100644 --- a/tests/version_test.py +++ b/tests/version_test.py @@ -6,11 +6,14 @@ from pathlib import Path import tomli as toml +import yaml +from jinja2 import Template +from packaging.version import Version import omf -def get_version(): +def get_pyproject_version(): path = Path(__file__).resolve().parents[1] / "pyproject.toml" with open(str(path), encoding="utf-8") as file: @@ -19,6 +22,20 @@ def get_version(): return pyproject["tool"]["poetry"]["version"] +def get_conda_recipe_version(): + path = Path(__file__).resolve().parents[1] / "meta.yaml" + + with open(str(path), encoding="utf-8") as file: + content = file.read() + + template = Template(content) + rendered_yaml = template.render() + + recipe = yaml.safe_load(rendered_yaml) + + return recipe["package"]["version"] + + def get_version_in_readme() -> str | None: path = Path(__file__).resolve().parents[1] / "README.rst" @@ -32,7 +49,10 @@ def get_version_in_readme() -> str | None: def test_version_is_consistent(): - assert omf.__version__ == get_version() + assert omf.__version__ == get_pyproject_version() + normalized_conda_version = Version(get_conda_recipe_version()) + normalized_version = Version(omf.__version__) + assert normalized_conda_version == normalized_version def version_base_and_pre() -> tuple[str, str]: From 57c78569806ba88ddc4a1a76e1a2c3112f10748e Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 17 Dec 2024 10:14:17 -0500 Subject: [PATCH 10/22] [DEVOPS-540] Add test dependencies --- pyproject.toml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index 0b7f64b0..eb7bd8f4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -65,6 +65,9 @@ pylint = "*" pytest = "*" pytest-cov = "*" sphinx = "^5.3" +pyyaml = '*' +jinja2 = '*' +packaging = '*' tomli = "*" # for tests only [tool.ruff] From 789c3f2b7dd1cf61ae8b610362c846a0b583f7c5 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 17 Dec 2024 10:17:01 -0500 Subject: [PATCH 11/22] [DEVOPS-540] Lock poetry --- poetry.lock | 470 +++++++++++++++++++++++++++++++--------------------- 1 file changed, 285 insertions(+), 185 deletions(-) diff --git a/poetry.lock b/poetry.lock index a5da352d..6cc93ff2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -24,13 +24,13 @@ files = [ [[package]] name = "astroid" -version = "3.3.5" +version = "3.3.6" description = "An abstract syntax tree for Python with inference support." optional = false python-versions = ">=3.9.0" files = [ - {file = "astroid-3.3.5-py3-none-any.whl", hash = "sha256:a9d1c946ada25098d790e079ba2a1b112157278f3fb7e718ae6a9252f5835dc8"}, - {file = "astroid-3.3.5.tar.gz", hash = "sha256:5cfc40ae9f68311075d27ef68a4841bdc5cc7f6cf86671b49f00607d30188e2d"}, + {file = "astroid-3.3.6-py3-none-any.whl", hash = "sha256:db676dc4f3ae6bfe31cda227dc60e03438378d7a896aec57422c95634e8d722f"}, + {file = "astroid-3.3.6.tar.gz", hash = "sha256:6aaea045f938c735ead292204afdb977a36e989522b7833ef6fea94de743f442"}, ] [package.dependencies] @@ -52,13 +52,13 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] [[package]] name = "certifi" -version = "2024.8.30" +version = "2024.12.14" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"}, - {file = "certifi-2024.8.30.tar.gz", hash = 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"sha256:cd45e1dc79c835ce60f7404ec8119f2eb06d38b1deba146f07ced3bbc44505ff"}, ] [[package]] @@ -1152,4 +1252,4 @@ numpy = ">=1.7" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "220bd5a8f23bd8b20867fb89ca2bc5af2447b06a110bdde45047db9dcc7542a6" +content-hash = "79edfb3e198b9e9159d3cb8ada4e9722b5d43949b7f0a67884d18f0f4fc36361" From e01eefa18b07d38e5456b20e891c48246689b5d3 Mon Sep 17 00:00:00 2001 From: SophieCurinier Date: Tue, 17 Dec 2024 13:39:01 -0500 Subject: [PATCH 12/22] [DEVOPS-540] Correct mypy config --- .pre-commit-config.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 32c89854..930fc1ef 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -39,6 +39,7 @@ repos: tomli, # to read config from pyproject.toml types-six, types-toml, + types-PyYAML ] files: ^(omf/fileio/geoh5\.py$|omf/scripts/|tests/) exclude: ^docs/ From 8dc0108f020fdfab279f47c30fa9dd0c27fb9ddc Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 9 Jan 2025 19:21:36 -0500 Subject: [PATCH 13/22] [GEOPY-1933] update copyright year --- README.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.rst b/README.rst index 672e7de0..dac50313 100644 --- a/README.rst +++ b/README.rst @@ -89,7 +89,7 @@ License ^^^^^^^ MIT License -Copyright (c) 2024 Mira Geoscience +Copyright (c) 2025 Mira Geoscience Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal From 5bd2be706897be4e176c1f864850789f5b4c1581 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 9 Jan 2025 19:14:14 -0500 Subject: [PATCH 14/22] [GEOPY-1935] bump version to rc.1 --- README.rst | 2 +- docs/conf.py | 2 +- meta.yaml | 2 +- omf/__init__.py | 2 +- pyproject.toml | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/README.rst b/README.rst index dac50313..95c7b8c0 100644 --- a/README.rst +++ b/README.rst @@ -18,7 +18,7 @@ omf :alt: pytest -Version: 3.3.0-beta.2 +Version: 3.3.0-rc.1 API library for Open Mining Format, a new standard for mining data backed by the `Global Mining Standards & Guidelines Group `_. diff --git a/docs/conf.py b/docs/conf.py index a2ca2f53..a720c1e6 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -64,7 +64,7 @@ # The short X.Y version. version = u'3.3.0' # The full version, including alpha/beta/rc tags. -release = u'3.3.0-beta.2' +release = u'3.3.0-rc.1' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/meta.yaml b/meta.yaml index d32bc215..f9f0702a 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,5 +1,5 @@ {% set name = "mira-omf" %} -{% set version = "3.3.0b2" %} +{% set version = "3.3.0rc1" %} package: name: {{ name|lower }} diff --git a/omf/__init__.py b/omf/__init__.py index ab041f45..cc5c7b13 100644 --- a/omf/__init__.py +++ b/omf/__init__.py @@ -30,7 +30,7 @@ from .volume import VolumeElement, VolumeGridGeometry -__version__ = "3.3.0-beta.2" +__version__ = "3.3.0-rc.1" __author__ = "Global Mining Standards and Guidelines Group" __license__ = "MIT License" __copyright__ = "Copyright 2017 Global Mining Standards and Guidelines Group" diff --git a/pyproject.toml b/pyproject.toml index eb7bd8f4..d32c0416 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "mira-omf" -version = "3.3.0-beta.2" +version = "3.3.0-rc.1" description = "API Library for Open Mining Format" license = "MIT" authors = [ From 81ae0d9bc7898ca13abf13860137010b2b221998 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 9 Jan 2025 19:17:35 -0500 Subject: [PATCH 15/22] [GEOPY-1935] relock on newer geoh5py --- poetry.lock | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index 6cc93ff2..aa71f3a4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. [[package]] name = "alabaster" @@ -305,13 +305,13 @@ test = ["pytest (>=6)"] [[package]] name = "geoh5py" -version = "0.10.0b4" +version = "0.10.0rc1" description = "Python API for geoh5, an open file format for geoscientific data" optional = false python-versions = "<4.0,>=3.10" files = [ - {file = "geoh5py-0.10.0b4-py3-none-any.whl", hash = "sha256:debf979f0e5ef2ac3dee51a50fc44eb3a5eb9ef5ff18d1de7b2fd6b5e76734f6"}, - {file = "geoh5py-0.10.0b4.tar.gz", hash = "sha256:8695cc1b75cb5194729354e9dcd6c67487fc6ecc5aeb12df6c717b20d4fef67f"}, + {file = "geoh5py-0.10.0rc1-py3-none-any.whl", hash = "sha256:50a6b8f52a0dafd9cff1706155c50262d66d193a063822f32837e0e424ead9f2"}, + {file = "geoh5py-0.10.0rc1.tar.gz", hash = "sha256:19d5a89f4d340e937ae6741af086df8ac3048905457dc405dcc60472a24aa1c0"}, ] [package.dependencies] From 71d9d4c36c720d12ece8b0bf97ef7b102dbe38e1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 9 Jan 2025 19:25:53 -0500 Subject: [PATCH 16/22] [GEOPY-1935] pecommit autoupdate --- .pre-commit-config.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 930fc1ef..18510fba 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -17,12 +17,12 @@ repos: - id: poetry-check args: [--lock] - repo: https://github.com/hadialqattan/pycln - rev: v2.4.0 + rev: v2.5.0 hooks: - id: pycln args: [--config=pyproject.toml] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.0 + rev: v0.9.0 hooks: - id: ruff args: @@ -31,7 +31,7 @@ repos: # - --unsafe-fixes - id: ruff-format - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.12.0 + rev: v1.14.1 hooks: - id: mypy additional_dependencies: [ @@ -44,13 +44,13 @@ repos: files: ^(omf/fileio/geoh5\.py$|omf/scripts/|tests/) exclude: ^docs/ - repo: https://github.com/codingjoe/relint - rev: 3.2.0 + rev: 3.3.1 hooks: - id: relint args: [-W] # to fail on warnings files: ^(omf/fileio/geoh5\.py$|omf/scripts/|tests/) - repo: https://github.com/MiraGeoscience/pre-commit-hooks - rev: v1.0.1 + rev: v1.0.2 hooks: # - id: check-copyright # no copyright nor license notice: differ to upstream repo # files: ^(omf/fileio/geoh5\.py$|omf/scripts/|tests/) From 6eac7b4c139fcfe6db094ebffdacd105812dcca9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Thu, 9 Jan 2025 19:41:38 -0500 Subject: [PATCH 17/22] [GEOPY-1935] fix expected error text in test for Python 3.12 --- tests/script_omf_to_geoh5_test.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/tests/script_omf_to_geoh5_test.py b/tests/script_omf_to_geoh5_test.py index 8ea40236..65d4bb79 100644 --- a/tests/script_omf_to_geoh5_test.py +++ b/tests/script_omf_to_geoh5_test.py @@ -1,3 +1,4 @@ +import re from pathlib import Path from unittest.mock import patch @@ -144,7 +145,4 @@ def test_omf_to_geoh5_with_gzip_level_too_high(capsys, tmp_path: Path): assert not output_path.exists() assert captured_exception.value.code == 2 captured_err = capsys.readouterr().err - assert any( - "error: argument --gzip: invalid choice: 10" in line - for line in captured_err.splitlines() - ) + assert re.search(r"error: argument --gzip: invalid choice:", captured_err) From 9e7c58eb1b34a69924a30f4a19dbe78d626f5792 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 00:01:01 -0500 Subject: [PATCH 18/22] [GEOPY-1933] configure and add copyrights statements --- .idea/copyright/GMG.xml | 8 ++++++++ .idea/copyright/MiraGeoscience.xml | 8 ++++++++ .idea/copyright/profiles_settings.xml | 21 +++++++++++++++++++++ .idea/scopes/sources.xml | 4 ++-- .pre-commit-config.yaml | 25 +++++++++++++++++++++++-- LICENSE | 1 + README.rst | 3 ++- omf/__init__.py | 10 ++++++++++ omf/base.py | 10 ++++++++++ omf/data.py | 10 ++++++++++ omf/fileio/__init__.py | 10 ++++++++++ omf/fileio/fileio.py | 10 ++++++++++ omf/fileio/geoh5.py | 10 ++++++++++ omf/fileio/utils.py | 10 ++++++++++ omf/lineset.py | 10 ++++++++++ omf/pointset.py | 10 ++++++++++ omf/scripts/__init__.py | 9 +++++++++ omf/scripts/geoh5_to_omf.py | 10 ++++++++++ omf/scripts/omf_to_geoh5.py | 10 ++++++++++ omf/serializers.py | 10 ++++++++++ omf/surface.py | 10 ++++++++++ omf/texture.py | 10 ++++++++++ omf/volume.py | 10 ++++++++++ tests/__init__.py | 9 +++++++++ tests/conftest.py | 10 ++++++++++ tests/convert_curve_test.py | 10 ++++++++++ tests/convert_grid2d_test.py | 10 ++++++++++ tests/convert_pointset_test.py | 10 ++++++++++ tests/convert_project_test.py | 10 ++++++++++ tests/convert_surface_test.py | 10 ++++++++++ tests/convert_volume_test.py | 10 ++++++++++ tests/doc_example_test.py | 10 ++++++++++ tests/script_geoh5_to_omf_test.py | 10 ++++++++++ tests/script_omf_to_geoh5_test.py | 10 ++++++++++ tests/version_test.py | 10 ++++++++++ 35 files changed, 343 insertions(+), 5 deletions(-) create mode 100644 .idea/copyright/GMG.xml create mode 100644 .idea/copyright/MiraGeoscience.xml create mode 100644 .idea/copyright/profiles_settings.xml diff --git a/.idea/copyright/GMG.xml b/.idea/copyright/GMG.xml new file mode 100644 index 00000000..f32445b3 --- /dev/null +++ b/.idea/copyright/GMG.xml @@ -0,0 +1,8 @@ + + + + \ No newline at end of file diff --git a/.idea/copyright/MiraGeoscience.xml b/.idea/copyright/MiraGeoscience.xml new file mode 100644 index 00000000..2d6a4985 --- /dev/null +++ b/.idea/copyright/MiraGeoscience.xml @@ -0,0 +1,8 @@ + + + + \ No newline at end of file diff --git a/.idea/copyright/profiles_settings.xml b/.idea/copyright/profiles_settings.xml new file mode 100644 index 00000000..d2e98418 --- /dev/null +++ b/.idea/copyright/profiles_settings.xml @@ -0,0 +1,21 @@ + + + + + + + + + + + \ No newline at end of file diff --git a/.idea/scopes/sources.xml b/.idea/scopes/sources.xml index ac2cbbb6..f4755295 100644 --- a/.idea/scopes/sources.xml +++ b/.idea/scopes/sources.xml @@ -1,3 +1,3 @@ - - + + \ No newline at end of file diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 18510fba..01c4a45b 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -52,9 +52,30 @@ repos: - repo: https://github.com/MiraGeoscience/pre-commit-hooks rev: v1.0.2 hooks: -# - id: check-copyright # no copyright nor license notice: differ to upstream repo -# files: ^(omf/fileio/geoh5\.py$|omf/scripts/|tests/) + - id: check-copyright + files: (^package\.rst|^LICENSE|^README(|-dev)\.rst|\.py|\.pyi)$ + # do not check sources from the original omf package + exclude: | + (?x)( + ^\.| + ^docs/| + omf/( + fileio/__init__| + fileio/fileio| + fileio/utils| + __init__| + base| + data| + lineset| + pointset| + serializers| + surface| + texture| + volume).py| + tests/doc_example_test.py + )$ - id: prepare-commit-msg + - id: check-commit-msg - repo: local hooks: - id: pylint diff --git a/LICENSE b/LICENSE index 79729d2b..3833ab50 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,7 @@ MIT License Copyright (c) 2017 Global Mining Standards and Guidelines Group +Copyright (c) 2022-2025 Mira Geoscience Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/README.rst b/README.rst index 95c7b8c0..7d7187c8 100644 --- a/README.rst +++ b/README.rst @@ -89,7 +89,8 @@ License ^^^^^^^ MIT License -Copyright (c) 2025 Mira Geoscience +Copyright (c) 2017 Global Mining Standards and Guidelines Group +Copyright (c) 2022-2025 Mira Geoscience Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/omf/__init__.py b/omf/__init__.py index cc5c7b13..0ce739b5 100644 --- a/omf/__init__.py +++ b/omf/__init__.py @@ -1,5 +1,15 @@ """omf: API library for Open Mining Format file interchange format""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import logging import sys diff --git a/omf/base.py b/omf/base.py index 983da60c..b1a76611 100644 --- a/omf/base.py +++ b/omf/base.py @@ -1,5 +1,15 @@ """base.py: OMF Project and base classes for its components""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from __future__ import annotations import datetime diff --git a/omf/data.py b/omf/data.py index 5d41a45f..3cd34a28 100644 --- a/omf/data.py +++ b/omf/data.py @@ -1,5 +1,15 @@ """data.py: different ProjectElementData classes""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import numpy as np import properties diff --git a/omf/fileio/__init__.py b/omf/fileio/__init__.py index ac53c272..0e87312f 100644 --- a/omf/fileio/__init__.py +++ b/omf/fileio/__init__.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from .fileio import OMFReader, OMFWriter from .geoh5 import GeoH5Writer from .utils import compare_elements diff --git a/omf/fileio/fileio.py b/omf/fileio/fileio.py index 0ad7dd13..bd214e95 100644 --- a/omf/fileio/fileio.py +++ b/omf/fileio/fileio.py @@ -1,5 +1,15 @@ """fileio.py: OMF Writer and Reader for serializing to and from .omf files""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from __future__ import annotations import json diff --git a/omf/fileio/geoh5.py b/omf/fileio/geoh5.py index 54d3bcc1..3e40652d 100644 --- a/omf/fileio/geoh5.py +++ b/omf/fileio/geoh5.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + # pylint: disable=too-many-lines from __future__ import annotations diff --git a/omf/fileio/utils.py b/omf/fileio/utils.py index 54f76d1e..c1128530 100644 --- a/omf/fileio/utils.py +++ b/omf/fileio/utils.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from numpy import testing diff --git a/omf/lineset.py b/omf/lineset.py index d40c81d9..eb90d340 100644 --- a/omf/lineset.py +++ b/omf/lineset.py @@ -1,5 +1,15 @@ """lineset.py: LineSet element and geometry""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import numpy as np import properties diff --git a/omf/pointset.py b/omf/pointset.py index 64f4c140..e957a5ee 100644 --- a/omf/pointset.py +++ b/omf/pointset.py @@ -1,5 +1,15 @@ """pointset.py: PointSet element and geometry""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import properties from .base import ProjectElement, ProjectElementGeometry diff --git a/omf/scripts/__init__.py b/omf/scripts/__init__.py index e69de29b..d8b6fd73 100644 --- a/omf/scripts/__init__.py +++ b/omf/scripts/__init__.py @@ -0,0 +1,9 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' diff --git a/omf/scripts/geoh5_to_omf.py b/omf/scripts/geoh5_to_omf.py index c58bcb67..a9412926 100644 --- a/omf/scripts/geoh5_to_omf.py +++ b/omf/scripts/geoh5_to_omf.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import argparse import logging import sys diff --git a/omf/scripts/omf_to_geoh5.py b/omf/scripts/omf_to_geoh5.py index f710ed5b..a0e285df 100644 --- a/omf/scripts/omf_to_geoh5.py +++ b/omf/scripts/omf_to_geoh5.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import argparse import logging import sys diff --git a/omf/serializers.py b/omf/serializers.py index 99c9998d..3715d52d 100644 --- a/omf/serializers.py +++ b/omf/serializers.py @@ -1,5 +1,15 @@ """serializers.py: array and image serializers/deserializers for OMF file IO""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import zlib from io import BytesIO diff --git a/omf/surface.py b/omf/surface.py index 7f3e0aac..cea30fac 100644 --- a/omf/surface.py +++ b/omf/surface.py @@ -1,5 +1,15 @@ """surface.py: Surface element and geometry""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import numpy as np import properties diff --git a/omf/texture.py b/omf/texture.py index 631406c7..8f00c902 100644 --- a/omf/texture.py +++ b/omf/texture.py @@ -1,5 +1,15 @@ """texture.py: contains ImageTexture definition""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import properties from .base import ContentModel diff --git a/omf/volume.py b/omf/volume.py index d399e47e..8982fb14 100644 --- a/omf/volume.py +++ b/omf/volume.py @@ -1,5 +1,15 @@ """volume.py: Volume element and geometry""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import numpy as np import properties diff --git a/tests/__init__.py b/tests/__init__.py index e69de29b..d8b6fd73 100644 --- a/tests/__init__.py +++ b/tests/__init__.py @@ -0,0 +1,9 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' diff --git a/tests/conftest.py b/tests/conftest.py index 088d863b..4d71bdda 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path import numpy as np diff --git a/tests/convert_curve_test.py b/tests/convert_curve_test.py index bba8f5a3..4094a1c3 100644 --- a/tests/convert_curve_test.py +++ b/tests/convert_curve_test.py @@ -1,5 +1,15 @@ """Tests for PointSet validation""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path import numpy as np diff --git a/tests/convert_grid2d_test.py b/tests/convert_grid2d_test.py index 0975ba14..219eff30 100644 --- a/tests/convert_grid2d_test.py +++ b/tests/convert_grid2d_test.py @@ -1,5 +1,15 @@ """Tests for PointSet validation""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import logging from pathlib import Path diff --git a/tests/convert_pointset_test.py b/tests/convert_pointset_test.py index bbc259bc..3ca2cb98 100644 --- a/tests/convert_pointset_test.py +++ b/tests/convert_pointset_test.py @@ -1,5 +1,15 @@ """Tests for PointSet validation""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path import numpy as np diff --git a/tests/convert_project_test.py b/tests/convert_project_test.py index 586d12f7..2feca2fc 100644 --- a/tests/convert_project_test.py +++ b/tests/convert_project_test.py @@ -1,5 +1,15 @@ """Tests for PointSet validation""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import logging import os from pathlib import Path diff --git a/tests/convert_surface_test.py b/tests/convert_surface_test.py index 0b33e6eb..407df7c9 100644 --- a/tests/convert_surface_test.py +++ b/tests/convert_surface_test.py @@ -1,5 +1,15 @@ """Tests for PointSet validation""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path import numpy as np diff --git a/tests/convert_volume_test.py b/tests/convert_volume_test.py index 913e9323..b0a887d4 100644 --- a/tests/convert_volume_test.py +++ b/tests/convert_volume_test.py @@ -1,5 +1,15 @@ """Tests for PointSet validation""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path import numpy as np diff --git a/tests/doc_example_test.py b/tests/doc_example_test.py index 4374b72f..6131451f 100644 --- a/tests/doc_example_test.py +++ b/tests/doc_example_test.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path import omf diff --git a/tests/script_geoh5_to_omf_test.py b/tests/script_geoh5_to_omf_test.py index e21705fb..8c6c200f 100644 --- a/tests/script_geoh5_to_omf_test.py +++ b/tests/script_geoh5_to_omf_test.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from pathlib import Path from unittest.mock import patch diff --git a/tests/script_omf_to_geoh5_test.py b/tests/script_omf_to_geoh5_test.py index 65d4bb79..159607cf 100644 --- a/tests/script_omf_to_geoh5_test.py +++ b/tests/script_omf_to_geoh5_test.py @@ -1,3 +1,13 @@ +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import re from pathlib import Path from unittest.mock import patch diff --git a/tests/version_test.py b/tests/version_test.py index 6f7c3725..571408d8 100644 --- a/tests/version_test.py +++ b/tests/version_test.py @@ -1,5 +1,15 @@ """Test the version follows SemVer and is consistent across files.""" +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2025 Mira Geoscience Ltd. ' +# ' +# This file is part of mira-omf package. ' +# ' +# mira-omf is distributed under the terms and conditions of the MIT License ' +# (see LICENSE file at the root of this source code package). ' +# ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + from __future__ import annotations import re From 2e5a1b86b4e21aa4a7b7f75f8f985cc4b23ba709 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 00:08:32 -0500 Subject: [PATCH 19/22] [GEOPY-1933] dual copyright in __init__.py --- .pre-commit-config.yaml | 1 - omf/__init__.py | 10 ++++++++-- 2 files changed, 8 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 01c4a45b..97e94612 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -63,7 +63,6 @@ repos: fileio/__init__| fileio/fileio| fileio/utils| - __init__| base| data| lineset| diff --git a/omf/__init__.py b/omf/__init__.py index 0ce739b5..c9ead514 100644 --- a/omf/__init__.py +++ b/omf/__init__.py @@ -2,6 +2,9 @@ # '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' # Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' # ' # This file is part of mira-omf package. ' # ' @@ -41,9 +44,12 @@ __version__ = "3.3.0-rc.1" -__author__ = "Global Mining Standards and Guidelines Group" +__author__ = "Global Mining Standards and Guidelines Group, Mira Geoscience Ltd." __license__ = "MIT License" -__copyright__ = "Copyright 2017 Global Mining Standards and Guidelines Group" +__copyright__ = ( + "Copyright 2017 Global Mining Standards and Guidelines Group, " + "Copyright 2022-2025 Mira Geoscience Ltd." +) def _create_logger(): From ddb77e4a342a75e3397fbc5c24533d999cf73cc4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 00:31:53 -0500 Subject: [PATCH 20/22] [GEOPY-1933] dual copyright in __init__.py --- .idea/copyright/profiles_settings.xml | 2 +- omf/__init__.py | 7 ++++--- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/.idea/copyright/profiles_settings.xml b/.idea/copyright/profiles_settings.xml index d2e98418..0313fd03 100644 --- a/.idea/copyright/profiles_settings.xml +++ b/.idea/copyright/profiles_settings.xml @@ -1,5 +1,5 @@ - + diff --git a/omf/__init__.py b/omf/__init__.py index c9ead514..b17ec295 100644 --- a/omf/__init__.py +++ b/omf/__init__.py @@ -1,8 +1,5 @@ """omf: API library for Open Mining Format file interchange format""" -# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' -# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' # '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' # Copyright (c) 2022-2025 Mira Geoscience Ltd. ' # ' @@ -13,6 +10,10 @@ # ' # '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' +# Copyright (c) 2017 Global Mining Standards and Guidelines Group ' +# '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' + import logging import sys From 1c8e039ef678b75eef98aeb54ae8aedc189e6238 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 00:32:28 -0500 Subject: [PATCH 21/22] [GEOPY-1933] copyright date range: since 2022 --- omf/fileio/geoh5.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/omf/fileio/geoh5.py b/omf/fileio/geoh5.py index 3e40652d..143525fa 100644 --- a/omf/fileio/geoh5.py +++ b/omf/fileio/geoh5.py @@ -1,5 +1,5 @@ # '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -# Copyright (c) 2025 Mira Geoscience Ltd. ' +# Copyright (c) 2022-2025 Mira Geoscience Ltd. ' # ' # This file is part of mira-omf package. ' # ' From 8c2dd42388cbd3f3cfc2f387e0bad16d1d951970 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?S=C3=A9bastien=20Hensgen?= Date: Fri, 10 Jan 2025 01:00:24 -0500 Subject: [PATCH 22/22] [GEOPY-1933] fix file exclusion for copyright check --- .pre-commit-config.yaml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 97e94612..4dc9ef07 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -57,8 +57,8 @@ repos: # do not check sources from the original omf package exclude: | (?x)( - ^\.| - ^docs/| + ^\..*| + ^docs/.*| omf/( fileio/__init__| fileio/fileio| @@ -70,8 +70,8 @@ repos: serializers| surface| texture| - volume).py| - tests/doc_example_test.py + volume)\.py| + tests/doc_example_test\.py )$ - id: prepare-commit-msg - id: check-commit-msg