genome_id = sequence in df_arts

[Sam-Will]

For a lot of genome_id values present in df_arts_allhits_as-7.1.0.csv there is either 'sequence', 'extrachromosomal' or 'genome'. It appears to only happen when duplication column is TRUE.

E.g.

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NBC_00193__TIGR00558__1__1721	TIGR00558	NBC_00193	phzG	phenazine biosynthesis FMN-dependent oxidase PhzG	2038838	2039459	1	scaffold_1	1721	CDS	11	NBC_00193__arts_core__TIGR00558	TRUE	TRUE	FALSE	NBC_00193_4.region011
NBC_00193__TIGR00945__3__7070	TIGR00945	sequence	tatC	twin-arginine translocase subunit TatC	121892	122693	1	scaffold_3	7070	CDS	11	NBC_00193__arts_core__TIGR00945	TRUE	FALSE	FALSE	NBC_00193_6.region002
NBC_00193__TIGR01534__1__5156	TIGR01534	NBC_00193	gap	type I glyceraldehyde-3-phosphate dehydrogenase	5831800	5832799	1	scaffold_1	5156	CDS	11	NBC_00193__arts_core__TIGR01534	TRUE	TRUE	TRUE	NBC_00193_4.region015
NBC_00193__TIGR02393__1__511	TIGR02393	sequence	-	RNA polymerase sigma factor	637782	639393	-1	scaffold_1	511	CDS	11	NBC_00193__arts_core__TIGR02393	TRUE	FALSE	FALSE	NBC_00193_4.region007
NBC_00193__TIGR02504__1__538	TIGR02504	NBC_00193	-	vitamin B12-dependent ribonucleotide reductase	672375	675270	-1	scaffold_1	538	CDS	11	NBC_00193__arts_core__TIGR02504	FALSE	FALSE	FALSE	NBC_00193_4.region007
NBC_00193__TIGR03156__1__547	TIGR03156	NBC_00193	hflX	GTPase HflX	690034	691543	-1	scaffold_1	547	Core	11	NBC_00193__arts_core__TIGR03156	FALSE	FALSE	FALSE	NBC_00193_4.region007
NBC_00193__TIGR03446__1__1401	TIGR03446	NBC_00193	mca	mycothiol conjugate amidase Mca	1702115	1702997	-1	scaffold_1	1401	Core	11	NBC_00193__arts_core__TIGR03446	FALSE	FALSE	FALSE	NBC_00193_4.region010
NBC_00193__TIGR03451__2__6223	TIGR03451	NBC_00193	-	S-(hydroxymethyl)mycothiol dehydrogenase	748963	750049	-1	scaffold_2	6223	CDS	11	NBC_00193__arts_core__TIGR03451	FALSE	TRUE	FALSE	NBC_00193_7.region004

If you need more information, don't hesitate to ask.

Thanks,
Sam

[matinnuhamunada]

Thanks, this seems to be related to #330