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For a lot of genome_id values present in df_arts_allhits_as-7.1.0.csv there is either 'sequence', 'extrachromosomal' or 'genome'. It appears to only happen when duplication column is TRUE.
E.g.
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NBC_00193__TIGR00558__1__1721
TIGR00558
NBC_00193
phzG
phenazine biosynthesis FMN-dependent oxidase PhzG
2038838
2039459
1
scaffold_1
1721
CDS
11
NBC_00193__arts_core__TIGR00558
TRUE
TRUE
FALSE
NBC_00193_4.region011
NBC_00193__TIGR00945__3__7070
TIGR00945
sequence
tatC
twin-arginine translocase subunit TatC
121892
122693
1
scaffold_3
7070
CDS
11
NBC_00193__arts_core__TIGR00945
TRUE
FALSE
FALSE
NBC_00193_6.region002
NBC_00193__TIGR01534__1__5156
TIGR01534
NBC_00193
gap
type I glyceraldehyde-3-phosphate dehydrogenase
5831800
5832799
1
scaffold_1
5156
CDS
11
NBC_00193__arts_core__TIGR01534
TRUE
TRUE
TRUE
NBC_00193_4.region015
NBC_00193__TIGR02393__1__511
TIGR02393
sequence
-
RNA polymerase sigma factor
637782
639393
-1
scaffold_1
511
CDS
11
NBC_00193__arts_core__TIGR02393
TRUE
FALSE
FALSE
NBC_00193_4.region007
NBC_00193__TIGR02504__1__538
TIGR02504
NBC_00193
-
vitamin B12-dependent ribonucleotide reductase
672375
675270
-1
scaffold_1
538
CDS
11
NBC_00193__arts_core__TIGR02504
FALSE
FALSE
FALSE
NBC_00193_4.region007
NBC_00193__TIGR03156__1__547
TIGR03156
NBC_00193
hflX
GTPase HflX
690034
691543
-1
scaffold_1
547
Core
11
NBC_00193__arts_core__TIGR03156
FALSE
FALSE
FALSE
NBC_00193_4.region007
NBC_00193__TIGR03446__1__1401
TIGR03446
NBC_00193
mca
mycothiol conjugate amidase Mca
1702115
1702997
-1
scaffold_1
1401
Core
11
NBC_00193__arts_core__TIGR03446
FALSE
FALSE
FALSE
NBC_00193_4.region010
NBC_00193__TIGR03451__2__6223
TIGR03451
NBC_00193
-
S-(hydroxymethyl)mycothiol dehydrogenase
748963
750049
-1
scaffold_2
6223
CDS
11
NBC_00193__arts_core__TIGR03451
FALSE
TRUE
FALSE
NBC_00193_7.region004
If you need more information, don't hesitate to ask.
Thanks,
Sam
The text was updated successfully, but these errors were encountered:
For a lot of genome_id values present in df_arts_allhits_as-7.1.0.csv there is either 'sequence', 'extrachromosomal' or 'genome'. It appears to only happen when duplication column is TRUE.
E.g.
<style> </style>If you need more information, don't hesitate to ask.
Thanks,
Sam
The text was updated successfully, but these errors were encountered: