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sequence-analysis.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/obi/dev/modules/sequence-analysis.owl#"
xml:base="http://purl.obolibrary.org/obo/obi/dev/modules/sequence-analysis.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/obi/dev/modules/sequence-analysis.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000100 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000100"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000634 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000634"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000973 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000973"/>
<!-- http://purl.obolibrary.org/obo/OBI_0002565 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002565">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002585"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002578"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002579"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A data transformation in which adapter sequences at the end of a molecular sequence are cut (removed).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adapter-sequence trimming</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002566 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002566">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200000"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A data transformation in which data contained in 2 or more files are merged into a single file.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">file merge</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002567 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002567">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200187"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002580"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A data transformation in which one or more sequences (reads) are positioned on a reference sequence template (often a reference set of genes), according to the genetic base-pairing paradigm.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sequence alignment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002568 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002568">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200187"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002580"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002582"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The counting of features (typically, genes) within aligned sequence data, and organization of these counts into one or more tables.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sequence data feature count tabulation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002569 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002569">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000973"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002585"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a data transformation of sequence data in which (e.g., low quality) read bases are removed, to achieve some specific objective.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">trimmed sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002578 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002578">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nucleotide sequences of molecules that are ligated to assay samples prior to sequencing of these samples; these sequences are provided by assay kit manufacturers and typically used to combine sequencing of multiple samples in one assay run.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adapter sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002579 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002579">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a data transformation of sequence data in which reference subsequences corresponding to ligated library adapters are removed.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adapter-trimmed sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002580 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002580">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a sequence alignment.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aligned sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002581 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002581">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002566"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a data transformation of sequence data in which files containing aligned sequence data are merged together</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">merged aligned sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002582 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002582">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a sequence data feature count tabulation.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sequence library feature count data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002583 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002583">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000634"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a DNA methylation profiling assay</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DNA methylation profiling data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002584 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002584">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The results of a differential expression analysis.</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">differential expression analysis data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002585 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002585">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200000"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A data transformation in which subsequences of a molecular sequence are cut (removed).</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sequence trimming</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002601 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002601">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sequence data in which an identifier subsequence has been used to categorize each reads by source.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">demultiplexed sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002602 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002602">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sequence data from a sequence library generated from at least two different sources, where each read in the sequence data includes base calls from a multiplex identifier sequence that can be used to trace the source of the read to its source.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dan Berrios</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multiplexed sequence data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002975 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002975">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the start sites of proteins are identified by comparing the new sequence to that of a reference sequence in a database. The first amino acid of a protein sequence being analyzed is the input protein sequence start site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the first amino acid in a protein sequence being analyzed (input protein sequence).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input protein start</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">query protein start site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input protein sequence start site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002976 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002976">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the termination sites of proteins are identified by comparing the new sequence to that of a reference sequence in a database. The last amino acid of a protein sequence being analyzed is the input protein sequence stop site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the last amino acid in a protein sequence being analyzed (input protein sequence).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input protein stop</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">query protein stop site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input protein sequence stop site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002977 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002977">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the start sites of genes are identified by comparing the new sequence to that of a reference sequence in a database. The first nucelotide of a gene sequence being analyzed is the input gene sequence start site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the first nucleotide in a gene sequence being analyzed (input gene sequence).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input gene start</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">query gene start site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input gene sequence start site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002978 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002978">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the termination sites of genes are identified by comparing the new sequence to that of a reference sequence in a database. The last nucelotide of a gene sequence being analyzed is the input gene sequence stop site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the last nucelotide in a gene sequence being analyzed (input gene sequence).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input gene stop</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">query gene stop site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">input gene sequence stop site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002979 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002979">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the start sites of proteins are identified by comparing the new sequence to that of a reference sequence in a database. The first amino acid of a protein sequence being used for comparison is the reference protein sequence start site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the first amino acid in a reference protein sequence (sequence being used for comparison).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference protein start</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subject protein start site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference protein sequence start site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002980 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002980">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the termination sites of proteins are identified by comparing the new sequence to that of a reference sequence in a database. The last amino acid of a protein sequence used for comparison is the reference protein sequence stop site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the last amino acid in a reference protein sequence (sequence being used for comparison).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference protein stop</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subject protein stop site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference protein sequence stop site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002981 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002981">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the start sites of genes are identified by comparing the new sequence to that of a reference sequence in a database. The first nucelotide of a gene sequence used for comparison is the reference gene sequence start site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the first nucleotide in a reference gene sequence (sequence being used for comparison).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference gene start</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subject gene start site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference gene sequence start site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002982 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002982">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">When a new genome is sequenced, the termination sites of genes are identified by comparing the new sequence to that of a reference sequence in a database. The last nucelotide of a gene sequence used for comparison is the reference gene sequence stop site.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The position of the last nucelotide in a reference sequence (sequence being used for comparison).</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference gene stop</obo:IAO_0000118>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subject gene stop site</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Emma Griffiths</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reference gene sequence stop site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003056 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003056">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000973"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sequence datum that is the specified output of a read mapping and is the ratio of the count of mapped reads to the total count of reads.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proportion mapped reads</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0200000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000"/>
<!-- http://purl.obolibrary.org/obo/OBI_0200187 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200187"/>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->