From 2bb3b572e3116788a5c48f4c51b21b80ed8b6a60 Mon Sep 17 00:00:00 2001
From: Ashley Stewart <a.stewart.au@gmail.com>
Date: Tue, 22 Oct 2024 09:15:34 -0500
Subject: [PATCH] QSMxT: Switch FastSurfer to fixed fork

---
 recipes/qsmxt/build.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/recipes/qsmxt/build.sh b/recipes/qsmxt/build.sh
index 6f952541..59120f5c 100755
--- a/recipes/qsmxt/build.sh
+++ b/recipes/qsmxt/build.sh
@@ -68,7 +68,7 @@ neurodocker generate ${neurodocker_buildMode} \
        && nextqsm --download_weights" \
    --env PATH="\${PATH}:/opt/miniconda-latest/bin" \
    --run="pip install lapy==1.1.0 \
-       git clone --depth 1 --branch v1.1.1 https://github.com/Deep-MI/FastSurfer.git /opt/FastSurfer \
+       git clone --depth 1 --branch v1.1.1-2 https://github.com/astewartau/FastSurfer.git /opt/FastSurfer \
        && sed -i 's/cu113/cpu/g' /opt/FastSurfer/requirements.txt \
        && pip install -r /opt/FastSurfer/requirements.txt" \
    --env FASTSURFER_HOME="/opt/FastSurfer" \