From 3deb221530f48eaf94f7c219328bc6eff622916a Mon Sep 17 00:00:00 2001 From: schuemie Date: Tue, 8 Oct 2024 15:56:10 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20OHDSI/St?= =?UTF-8?q?rategus@f01bd49b9a25a1d863d47b64e07420b60996b96b=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/CreatingAnalysisSpecification.html | 2 +- articles/ExecuteStrategus.html | 2 +- articles/IntroductionToStrategus.html | 2 +- articles/WorkingWithResults.html | 2 +- authors.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/CharacterizationModule.html | 2 +- reference/CohortDiagnosticsModule.html | 2 +- reference/CohortGeneratorModule.html | 2 +- reference/CohortIncidenceModule.html | 2 +- reference/CohortMethodModule.html | 2 +- reference/EvidenceSynthesisModule.html | 2 +- reference/PatientLevelPredictionModule.html | 2 +- reference/SelfControlledCaseSeriesModule.html | 2 +- reference/Strategus-package.html | 2 +- reference/StrategusModule.html | 2 +- ...dCharacterizationModuleSpecifications.html | 2 +- ...CohortDiagnosticsModuleSpecifications.html | 2 +- ...ddCohortGeneratorModuleSpecifications.html | 2 +- ...ddCohortIncidenceModuleSpecifications.html | 2 +- .../addCohortMethodeModuleSpecifications.html | 2 +- ...EvidenceSynthesisModuleSpecifications.html | 2 +- reference/addModuleSpecifications.html | 2 +- ...ntLevelPredictionModuleSpecifications.html | 2 +- ...trolledCaseSeriesModuleSpecifications.html | 2 +- reference/addSharedResources.html | 2 +- reference/createCdmExecutionSettings.html | 2 +- .../createEmptyAnalysisSpecificiations.html | 2 +- reference/createResultDataModel.html | 2 +- reference/createResultsDataModelSettings.html | 2 +- reference/createResultsExecutionSettings.html | 2 +- reference/execute.html | 2 +- reference/getCdmDatabaseMetaData.html | 2 +- reference/uploadResults.html | 2 +- reference/zipResults.html | 2 +- results-schema/columns.html | 8904 ++++++++--------- results-schema/index.html | 2 +- results-schema/info-html.txt | 2 +- results-schema/strategus.results.xml | 28 +- results-schema/tables/c_covariates.html | 4 +- .../tables/c_covariates_continuous.html | 4 +- results-schema/tables/c_settings.html | 4 +- .../tables/ci_incidence_summary.html | 6 +- results-schema/tables/cm_analysis.html | 4 +- .../tables/cm_covariate_balance.html | 4 +- .../tables/sccs_covariate_result.html | 6 +- .../tables/sccs_diagnostics_summary.html | 4 +- .../tables/sccs_exposures_outcome_set.html | 4 +- results-schema/tables/sccs_result.html | 16 +- 50 files changed, 4532 insertions(+), 4532 deletions(-) diff --git a/articles/CreatingAnalysisSpecification.html b/articles/CreatingAnalysisSpecification.html index 42114ba9..e3c62c9a 100644 --- a/articles/CreatingAnalysisSpecification.html +++ b/articles/CreatingAnalysisSpecification.html @@ -66,7 +66,7 @@

Anthony G.

2024-10-08

- Source: vignettes/CreatingAnalysisSpecification.Rmd + Source: vignettes/CreatingAnalysisSpecification.Rmd
CreatingAnalysisSpecification.Rmd
diff --git a/articles/ExecuteStrategus.html b/articles/ExecuteStrategus.html index 8459d749..c6a8a4cc 100644 --- a/articles/ExecuteStrategus.html +++ b/articles/ExecuteStrategus.html @@ -66,7 +66,7 @@

Anthony G.

2024-10-08

- Source: vignettes/ExecuteStrategus.Rmd + Source: vignettes/ExecuteStrategus.Rmd
ExecuteStrategus.Rmd
diff --git a/articles/IntroductionToStrategus.html b/articles/IntroductionToStrategus.html index 1e25089a..6683c230 100644 --- a/articles/IntroductionToStrategus.html +++ b/articles/IntroductionToStrategus.html @@ -66,7 +66,7 @@

Anthony G.

2024-10-08

- Source: vignettes/IntroductionToStrategus.Rmd + Source: vignettes/IntroductionToStrategus.Rmd
IntroductionToStrategus.Rmd
diff --git a/articles/WorkingWithResults.html b/articles/WorkingWithResults.html index 201b0b0b..ebaa203c 100644 --- a/articles/WorkingWithResults.html +++ b/articles/WorkingWithResults.html @@ -66,7 +66,7 @@

Anthony G.

2024-10-08

- Source: vignettes/WorkingWithResults.Rmd + Source: vignettes/WorkingWithResults.Rmd
WorkingWithResults.Rmd
diff --git a/authors.html b/authors.html index 3659ba2f..39e84b49 100644 --- a/authors.html +++ b/authors.html @@ -61,7 +61,7 @@

Authors

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Sena A, Schuemie M, Gilbert J (2024). Strategus: Coordinate and Execute OHDSI HADES Modules. diff --git a/news/index.html b/news/index.html index 72dfedcf..f4bebc5c 100644 --- a/news/index.html +++ b/news/index.html @@ -36,7 +36,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index 9c303aca..7f1d7b1d 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -6,7 +6,7 @@ articles: ExecuteStrategus: ExecuteStrategus.html IntroductionToStrategus: IntroductionToStrategus.html WorkingWithResults: WorkingWithResults.html -last_built: 2024-10-08T15:12Z +last_built: 2024-10-08T15:34Z urls: reference: https://ohdsi.github.io/Strategus/reference article: https://ohdsi.github.io/Strategus/articles diff --git a/reference/CharacterizationModule.html b/reference/CharacterizationModule.html index bc8abfeb..f6583d70 100644 --- a/reference/CharacterizationModule.html +++ b/reference/CharacterizationModule.html @@ -38,7 +38,7 @@

Characterize cohorts with the HADES Characterization Package

- Source: R/Module-Characterization.R + Source: R/Module-Characterization.R
CharacterizationModule.Rd
diff --git a/reference/CohortDiagnosticsModule.html b/reference/CohortDiagnosticsModule.html index 06394a6f..4b432cd8 100644 --- a/reference/CohortDiagnosticsModule.html +++ b/reference/CohortDiagnosticsModule.html @@ -38,7 +38,7 @@

Evaluate phenotypes with the HADES CohortDiagnostics Package

- Source: R/Module-CohortDiagnostics.R + Source: R/Module-CohortDiagnostics.R
CohortDiagnosticsModule.Rd
diff --git a/reference/CohortGeneratorModule.html b/reference/CohortGeneratorModule.html index c774b535..2a657821 100644 --- a/reference/CohortGeneratorModule.html +++ b/reference/CohortGeneratorModule.html @@ -36,7 +36,7 @@

Generate cohorts with the HADES CohortGenerator Package

- Source: R/Module-CohortGenerator.R + Source: R/Module-CohortGenerator.R
CohortGeneratorModule.Rd
diff --git a/reference/CohortIncidenceModule.html b/reference/CohortIncidenceModule.html index 55991032..ec0473ed 100644 --- a/reference/CohortIncidenceModule.html +++ b/reference/CohortIncidenceModule.html @@ -36,7 +36,7 @@

Compute incidence with the HADES CohortIncidence Package

- Source: R/Module-CohortIncidence.R + Source: R/Module-CohortIncidence.R
CohortIncidenceModule.Rd
diff --git a/reference/CohortMethodModule.html b/reference/CohortMethodModule.html index b66d9512..547dd6c7 100644 --- a/reference/CohortMethodModule.html +++ b/reference/CohortMethodModule.html @@ -38,7 +38,7 @@

New-user cohort studies with the HADES CohortMethod Package

- Source: R/Module-CohortMethod.R + Source: R/Module-CohortMethod.R
CohortMethodModule.Rd
diff --git a/reference/EvidenceSynthesisModule.html b/reference/EvidenceSynthesisModule.html index 6a7e97e5..392c22c5 100644 --- a/reference/EvidenceSynthesisModule.html +++ b/reference/EvidenceSynthesisModule.html @@ -40,7 +40,7 @@

Meta-analysis with the HADES EvidenceSynthesis Package

- Source: R/Module-EvidenceSynthesis.R + Source: R/Module-EvidenceSynthesis.R
EvidenceSynthesisModule.Rd
diff --git a/reference/PatientLevelPredictionModule.html b/reference/PatientLevelPredictionModule.html index 1ed10cd1..cb2dd929 100644 --- a/reference/PatientLevelPredictionModule.html +++ b/reference/PatientLevelPredictionModule.html @@ -38,7 +38,7 @@

Patient-level prediction with the HADES PatientLevelPrediction Package

- Source: R/Module-PatientLevelPrediction.R + Source: R/Module-PatientLevelPrediction.R
PatientLevelPredictionModule.Rd
diff --git a/reference/SelfControlledCaseSeriesModule.html b/reference/SelfControlledCaseSeriesModule.html index 02825802..5dd5d151 100644 --- a/reference/SelfControlledCaseSeriesModule.html +++ b/reference/SelfControlledCaseSeriesModule.html @@ -38,7 +38,7 @@

Self-Controlled Case Series design with the HADES SelfControlledCaseSeries Package

- Source: R/Module-SelfControlledCaseSeries.R + Source: R/Module-SelfControlledCaseSeries.R
SelfControlledCaseSeriesModule.Rd
diff --git a/reference/Strategus-package.html b/reference/Strategus-package.html index 96769f47..510efe69 100644 --- a/reference/Strategus-package.html +++ b/reference/Strategus-package.html @@ -36,7 +36,7 @@

Strategus: Coordinate and Execute OHDSI HADES Modules

- Source: R/Strategus.R + Source: R/Strategus.R
Strategus-package.Rd
diff --git a/reference/StrategusModule.html b/reference/StrategusModule.html index 466fbcac..07af0662 100644 --- a/reference/StrategusModule.html +++ b/reference/StrategusModule.html @@ -42,7 +42,7 @@

StrategusModule defines the base class for each HADES module

- Source: R/StrategusModule.R + Source: R/StrategusModule.R
StrategusModule.Rd
diff --git a/reference/addCharacterizationModuleSpecifications.html b/reference/addCharacterizationModuleSpecifications.html index 62954cad..6739002e 100644 --- a/reference/addCharacterizationModuleSpecifications.html +++ b/reference/addCharacterizationModuleSpecifications.html @@ -36,7 +36,7 @@

Add Characterization module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addCharacterizationModuleSpecifications.Rd
diff --git a/reference/addCohortDiagnosticsModuleSpecifications.html b/reference/addCohortDiagnosticsModuleSpecifications.html index 0de1d181..7d632bee 100644 --- a/reference/addCohortDiagnosticsModuleSpecifications.html +++ b/reference/addCohortDiagnosticsModuleSpecifications.html @@ -36,7 +36,7 @@

Add Cohort Diagnostics module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addCohortDiagnosticsModuleSpecifications.Rd
diff --git a/reference/addCohortGeneratorModuleSpecifications.html b/reference/addCohortGeneratorModuleSpecifications.html index c1df3569..6d24b0a2 100644 --- a/reference/addCohortGeneratorModuleSpecifications.html +++ b/reference/addCohortGeneratorModuleSpecifications.html @@ -36,7 +36,7 @@

Add Cohort Generator module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addCohortGeneratorModuleSpecifications.Rd
diff --git a/reference/addCohortIncidenceModuleSpecifications.html b/reference/addCohortIncidenceModuleSpecifications.html index ba3f8af5..587f9579 100644 --- a/reference/addCohortIncidenceModuleSpecifications.html +++ b/reference/addCohortIncidenceModuleSpecifications.html @@ -36,7 +36,7 @@

Add Cohort Incidence module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addCohortIncidenceModuleSpecifications.Rd
diff --git a/reference/addCohortMethodeModuleSpecifications.html b/reference/addCohortMethodeModuleSpecifications.html index 43c42615..fb4b97c2 100644 --- a/reference/addCohortMethodeModuleSpecifications.html +++ b/reference/addCohortMethodeModuleSpecifications.html @@ -36,7 +36,7 @@

Add Cohort Method module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addCohortMethodeModuleSpecifications.Rd
diff --git a/reference/addEvidenceSynthesisModuleSpecifications.html b/reference/addEvidenceSynthesisModuleSpecifications.html index 495c5847..8055e755 100644 --- a/reference/addEvidenceSynthesisModuleSpecifications.html +++ b/reference/addEvidenceSynthesisModuleSpecifications.html @@ -36,7 +36,7 @@

Add Evidence Synthesis module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addEvidenceSynthesisModuleSpecifications.Rd
diff --git a/reference/addModuleSpecifications.html b/reference/addModuleSpecifications.html index 72115103..4ac784e9 100644 --- a/reference/addModuleSpecifications.html +++ b/reference/addModuleSpecifications.html @@ -36,7 +36,7 @@

Add generic module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addModuleSpecifications.Rd
diff --git a/reference/addPatientLevelPredictionModuleSpecifications.html b/reference/addPatientLevelPredictionModuleSpecifications.html index 27e82baf..9f765a77 100644 --- a/reference/addPatientLevelPredictionModuleSpecifications.html +++ b/reference/addPatientLevelPredictionModuleSpecifications.html @@ -36,7 +36,7 @@

Add Patient Level Prediction module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addPatientLevelPredictionModuleSpecifications.Rd
diff --git a/reference/addSelfControlledCaseSeriesModuleSpecifications.html b/reference/addSelfControlledCaseSeriesModuleSpecifications.html index b47701d4..aad6c6ab 100644 --- a/reference/addSelfControlledCaseSeriesModuleSpecifications.html +++ b/reference/addSelfControlledCaseSeriesModuleSpecifications.html @@ -36,7 +36,7 @@

Add Self Controlled Case Series Module module specifications to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addSelfControlledCaseSeriesModuleSpecifications.Rd
diff --git a/reference/addSharedResources.html b/reference/addSharedResources.html index 6e490a40..c64a68cf 100644 --- a/reference/addSharedResources.html +++ b/reference/addSharedResources.html @@ -36,7 +36,7 @@

Add shared resources (i.e. cohorts) to analysis specifications

- Source: R/Settings.R + Source: R/Settings.R
addSharedResources.Rd
diff --git a/reference/createCdmExecutionSettings.html b/reference/createCdmExecutionSettings.html index a8393c74..25417cb5 100644 --- a/reference/createCdmExecutionSettings.html +++ b/reference/createCdmExecutionSettings.html @@ -36,7 +36,7 @@

Create CDM execution settings

- Source: R/Settings.R + Source: R/Settings.R
createCdmExecutionSettings.Rd
diff --git a/reference/createEmptyAnalysisSpecificiations.html b/reference/createEmptyAnalysisSpecificiations.html index 87b43b3a..6912d507 100644 --- a/reference/createEmptyAnalysisSpecificiations.html +++ b/reference/createEmptyAnalysisSpecificiations.html @@ -36,7 +36,7 @@

Create an empty analysis specifications object.

- Source: R/Settings.R + Source: R/Settings.R
createEmptyAnalysisSpecificiations.Rd
diff --git a/reference/createResultDataModel.html b/reference/createResultDataModel.html index 66ebdc16..b9d61367 100644 --- a/reference/createResultDataModel.html +++ b/reference/createResultDataModel.html @@ -40,7 +40,7 @@

Create Result Data Model

- Source: R/ResultDataModel.R + Source: R/ResultDataModel.R
createResultDataModel.Rd
diff --git a/reference/createResultsDataModelSettings.html b/reference/createResultsDataModelSettings.html index a27f57c8..b0f061e2 100644 --- a/reference/createResultsDataModelSettings.html +++ b/reference/createResultsDataModelSettings.html @@ -38,7 +38,7 @@

Create Results Data Model Settings

- Source: R/Settings.R + Source: R/Settings.R
createResultsDataModelSettings.Rd
diff --git a/reference/createResultsExecutionSettings.html b/reference/createResultsExecutionSettings.html index ba5afba7..1048e72f 100644 --- a/reference/createResultsExecutionSettings.html +++ b/reference/createResultsExecutionSettings.html @@ -36,7 +36,7 @@

Create Results execution settings

- Source: R/Settings.R + Source: R/Settings.R
createResultsExecutionSettings.Rd
diff --git a/reference/execute.html b/reference/execute.html index bb592a45..91133004 100644 --- a/reference/execute.html +++ b/reference/execute.html @@ -36,7 +36,7 @@

Execute analysis specifications.

- Source: R/Execution.R + Source: R/Execution.R
execute.Rd
diff --git a/reference/getCdmDatabaseMetaData.html b/reference/getCdmDatabaseMetaData.html index 36ef4d4f..655471b4 100644 --- a/reference/getCdmDatabaseMetaData.html +++ b/reference/getCdmDatabaseMetaData.html @@ -40,7 +40,7 @@

Gets the metadata for your OMOP CDM Database

- Source: R/DatabaseMetaData.R + Source: R/DatabaseMetaData.R
getCdmDatabaseMetaData.Rd
diff --git a/reference/uploadResults.html b/reference/uploadResults.html index 626c6877..d9578d4c 100644 --- a/reference/uploadResults.html +++ b/reference/uploadResults.html @@ -36,7 +36,7 @@

Upload results

- Source: R/ResultDataModel.R + Source: R/ResultDataModel.R
uploadResults.Rd
diff --git a/reference/zipResults.html b/reference/zipResults.html index 8bf317ff..3d1c5fac 100644 --- a/reference/zipResults.html +++ b/reference/zipResults.html @@ -36,7 +36,7 @@

Create a zip file with all study results for sharing with study coordinator

- Source: R/ShareResults.R + Source: R/ShareResults.R
zipResults.Rd
diff --git a/results-schema/columns.html b/results-schema/columns.html index 49e6bba1..325f3ac6 100644 --- a/results-schema/columns.html +++ b/results-schema/columns.html @@ -111,74 +111,74 @@

Columns