From 802204422b25880bdc41138e596ac696746ee0b9 Mon Sep 17 00:00:00 2001
From: Benjamin Wingfield <bwingfield@ebi.ac.uk>
Date: Thu, 15 Feb 2024 15:38:06 +0000
Subject: [PATCH] delete samplesheet module

---
 modules/local/samplesheet_json.nf | 31 -------------------------------
 1 file changed, 31 deletions(-)
 delete mode 100644 modules/local/samplesheet_json.nf

diff --git a/modules/local/samplesheet_json.nf b/modules/local/samplesheet_json.nf
deleted file mode 100644
index e356733d..00000000
--- a/modules/local/samplesheet_json.nf
+++ /dev/null
@@ -1,31 +0,0 @@
-process SAMPLESHEET_JSON {
-    // labels are defined in conf/modules.config
-    label 'process_low'
-    label 'pgscatalog_utils' // controls conda, docker, + singularity options
-
-    tag "$samplesheet"
-
-    conda "${task.ext.conda}"
-
-    container "${ workflow.containerEngine == 'singularity' &&
-        !task.ext.singularity_pull_docker_container ?
-        "${task.ext.singularity}${task.ext.singularity_version}" :
-        "${task.ext.docker}${task.ext.docker_version}" }"
-
-    input:
-    path samplesheet
-
-    output:
-    path "out.json"    , emit: json
-    path "versions.yml", emit: versions
-
-    script:
-    """
-    samplesheet_to_json $samplesheet out.json
-
-    cat <<-END_VERSIONS > versions.yml
-    ${task.process.tokenize(':').last()}:
-        python: \$(echo \$(python --version 2>&1) | cut -f 2 -d ' ')
-    END_VERSIONS
-    """
-}