pgsc_calc v2.0.0-alpha.3

[nebfield]

Improvements:

• Automatically retry scoring with more RAM on larger datasets
• Describe scoring precision in docs
• Change handling of VCFs to reduce errors when recoding
• Internal changes to improve support for custom reference panels

Bug fixes:

• Fix VCF input to ancestry projection subworkflow (thanks frahimov and AWS-crafter for patiently debugging)
• Fix scoring options when reading allelic frequencies from a reference panel (thanks raimondsre for reporting the changes from v1.3.2 -> 2.0.0-alpha)
• Fix conda profile action

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This discussion was created from the release pgsc_calc v2.0.0-alpha.3.

[smlmbrt]

This is a critical update, as scoring without --run_ancestry will give erroneous results if the genotyped variants have high missingness.