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I would like to run pgsc_calc for many different scores and across hundreds of different samples (VCF). However, I don't want any individual sample to affect the scores of any other sample (e.g., I don't want to subset the variants to only variants in common between files, etc.). I typically provision 32 GB RAM.
How do you recommend speeding up processing time in this case? When I run scores in parallel, which steps are being skipped that would be repeated if I didn't run them in parallel?
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I would like to run pgsc_calc for many different scores and across hundreds of different samples (VCF). However, I don't want any individual sample to affect the scores of any other sample (e.g., I don't want to subset the variants to only variants in common between files, etc.). I typically provision 32 GB RAM.
How do you recommend speeding up processing time in this case? When I run scores in parallel, which steps are being skipped that would be repeated if I didn't run them in parallel?
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