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collect CRPM organoid data #266

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sgosline opened this issue Dec 12, 2024 · 2 comments
Open

collect CRPM organoid data #266

sgosline opened this issue Dec 12, 2024 · 2 comments
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new data Request for additional data to be added

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@sgosline
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Additional CRC dataset, this time from metastases

Paper is here:
https://aacrjournals.org/clincancerres/article/26/14/3662/9625/Medium-throughput-Drug-Screening-of-Patient
genomic data is in Table S1

rnaseq data is in

dose response data?

NGS data are available in dbGaP (phs002023.v1.p1) and GEO (GSE147971).

@sgosline sgosline self-assigned this Dec 12, 2024
@sgosline sgosline added the new data Request for additional data to be added label Dec 12, 2024
@sgosline
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Represents 19 patient organoids across 35 drugs

@sgosline
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sgosline commented Feb 6, 2025

Emailed authors. Data was collected by private company SEngine that was then bought out by Tempus. Data is from australia and not permitted for research reuse so cannot be shared. We will have to focus only on published AUC data, so i resent an email asking for that. if not we will have to give up.

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