diff --git a/base/db/DESCRIPTION b/base/db/DESCRIPTION index 76b55aed16..f88a16982e 100644 --- a/base/db/DESCRIPTION +++ b/base/db/DESCRIPTION @@ -73,7 +73,7 @@ Suggests: tidyverse, withr License: BSD_3_clause + file LICENSE -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown Copyright: Authors LazyLoad: yes LazyData: FALSE diff --git a/base/qaqc/DESCRIPTION b/base/qaqc/DESCRIPTION index 5334347a90..041f957d25 100644 --- a/base/qaqc/DESCRIPTION +++ b/base/qaqc/DESCRIPTION @@ -35,6 +35,6 @@ Copyright: Authors LazyLoad: yes LazyData: FALSE Encoding: UTF-8 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown Config/testthat/edition: 3 RoxygenNote: 7.3.2 diff --git a/base/visualization/DESCRIPTION b/base/visualization/DESCRIPTION index 136d5a9dbb..8b38be4c66 100644 --- a/base/visualization/DESCRIPTION +++ b/base/visualization/DESCRIPTION @@ -51,6 +51,6 @@ Copyright: Authors LazyLoad: yes LazyData: FALSE Encoding: UTF-8 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown RoxygenNote: 7.3.2 Roxygen: list(markdown = TRUE) diff --git a/docker/depends/pecan_package_dependencies.csv b/docker/depends/pecan_package_dependencies.csv index c332b010bc..1e8d04c40a 100644 --- a/docker/depends/pecan_package_dependencies.csv +++ b/docker/depends/pecan_package_dependencies.csv @@ -495,6 +495,7 @@ "rmarkdown","*","models/biocro","Suggests",FALSE "rmarkdown","*","models/ed","Suggests",FALSE "rmarkdown","*","models/maat","Suggests",FALSE +"rmarkdown","*","modules/data.atmosphere","Suggests",FALSE "rmarkdown","*","modules/priors","Suggests",FALSE "rmarkdown","*","modules/rtm","Suggests",FALSE "rmarkdown",">= 2.19","base/db","Suggests",FALSE diff --git a/models/biocro/DESCRIPTION b/models/biocro/DESCRIPTION index 981621c212..51a2475e4d 100644 --- a/models/biocro/DESCRIPTION +++ b/models/biocro/DESCRIPTION @@ -38,5 +38,5 @@ Remotes: License: BSD_3_clause + file LICENSE Copyright: Energy Biosciences Institute, Authors Encoding: UTF-8 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown RoxygenNote: 7.3.2 diff --git a/models/ed/DESCRIPTION b/models/ed/DESCRIPTION index 91181d1f47..308781f1a3 100644 --- a/models/ed/DESCRIPTION +++ b/models/ed/DESCRIPTION @@ -63,7 +63,7 @@ Suggests: Additional_repositories: https://pecanproject.r-universe.dev/ License: BSD_3_clause + file LICENSE Copyright: Authors -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown LazyData: true Encoding: UTF-8 RoxygenNote: 7.3.2 diff --git a/models/maat/DESCRIPTION b/models/maat/DESCRIPTION index 47d8001c37..ce1684852b 100644 --- a/models/maat/DESCRIPTION +++ b/models/maat/DESCRIPTION @@ -23,7 +23,7 @@ SystemRequirements: MAAT OS_type: unix License: BSD_3_clause + file LICENSE Copyright: Authors -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown LazyLoad: yes LazyData: FALSE Encoding: UTF-8 diff --git a/modules/allometry/DESCRIPTION b/modules/allometry/DESCRIPTION index f53cf4c06e..c031dc0276 100644 --- a/modules/allometry/DESCRIPTION +++ b/modules/allometry/DESCRIPTION @@ -30,4 +30,4 @@ LazyLoad: yes LazyData: FALSE Encoding: UTF-8 RoxygenNote: 7.3.2 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown diff --git a/modules/assim.batch/DESCRIPTION b/modules/assim.batch/DESCRIPTION index e94c946485..6283791ace 100644 --- a/modules/assim.batch/DESCRIPTION +++ b/modules/assim.batch/DESCRIPTION @@ -14,7 +14,7 @@ Description: The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown Imports: abind, BayesianTools, diff --git a/modules/data.atmosphere/DESCRIPTION b/modules/data.atmosphere/DESCRIPTION index fceb2f2d7f..ebfc9bbc63 100644 --- a/modules/data.atmosphere/DESCRIPTION +++ b/modules/data.atmosphere/DESCRIPTION @@ -69,6 +69,7 @@ Suggests: PEcAn.settings, progress, reticulate, + rmarkdown, testthat (>= 3.1.7), withr Remotes: @@ -80,6 +81,6 @@ License: BSD_3_clause + file LICENSE Copyright: Authors LazyLoad: yes LazyData: FALSE -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown Encoding: UTF-8 RoxygenNote: 7.3.2 diff --git a/modules/meta.analysis/DESCRIPTION b/modules/meta.analysis/DESCRIPTION index b231707a04..60ba579a6e 100644 --- a/modules/meta.analysis/DESCRIPTION +++ b/modules/meta.analysis/DESCRIPTION @@ -42,7 +42,7 @@ Suggests: testthat (>= 1.0.2) SystemRequirements: JAGS License: BSD_3_clause + file LICENSE -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown Copyright: Authors LazyData: FALSE Encoding: UTF-8 diff --git a/modules/photosynthesis/DESCRIPTION b/modules/photosynthesis/DESCRIPTION index e872f23b10..b101522ae9 100644 --- a/modules/photosynthesis/DESCRIPTION +++ b/modules/photosynthesis/DESCRIPTION @@ -36,4 +36,4 @@ LazyLoad: yes LazyData: FALSE Encoding: UTF-8 RoxygenNote: 7.3.2 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown diff --git a/modules/priors/DESCRIPTION b/modules/priors/DESCRIPTION index 39b066910e..abfc6f2bb5 100644 --- a/modules/priors/DESCRIPTION +++ b/modules/priors/DESCRIPTION @@ -24,5 +24,5 @@ Suggests: rmarkdown, testthat Encoding: UTF-8 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown RoxygenNote: 7.3.2 diff --git a/modules/rtm/DESCRIPTION b/modules/rtm/DESCRIPTION index 2c86cb2ba8..2be3ff4f0a 100644 --- a/modules/rtm/DESCRIPTION +++ b/modules/rtm/DESCRIPTION @@ -37,6 +37,6 @@ Copyright: Authors LazyLoad: yes LazyData: FALSE Encoding: UTF-8 -VignetteBuilder: knitr +VignetteBuilder: knitr, rmarkdown Roxygen: list(markdown = TRUE) RoxygenNote: 7.3.2