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Conferences and Events |
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20 - 22
Friedrich @ the KNIME Spring Summit 2019{:target="_blank"} in Berlin.
Friedrich presented a poster about how to use KNIME and open-source hardware to build a behavioral tracker for C. elegans.
04 - 15
Laura @ the EMBO Practical Course Methods for studying phase separation in biology{:target="_blank"} at Max Planck Institute of Molecular
Cell Biology and Genetics in Dresden.
01 - 29
Laura @ the lab of Sevinc Ercan{:target="_blank"} at NYU for a collaboration visit.
08 - 12
Stephan, Ella and Marwan @ From Images to Knowledge with ImageJ & Friends{:target="_blank"} in Heidelberg.
Stephan gave an invited talk about bigStitcher, Ella gave a short talk, and Klim presented a poster.
#### **October 2018** 29 - 31 Ella @ [EMBL Machine Learning for Image Analysis](https://www.ebi.ac.uk/training/events/2018/machine-learning-image-analysis){:target="_blank"} in Heidelberg.
08 - 12
Friedrich @ The Francis Crick Institute{:target="_blank"} in London.
Friedrich presented his work during a talk and collaborated with the Making Lab{:target="_blank"} to produce custom microfluidic chips for his project.
#### **September 2018**
27 - 29
Marwan and Friedrich @ MDC PhD Retreat{:target="_blank"} in Döllnsee–Schorfheide.
Marwan and Friedrich presented posters summarizing their work. Marwan's poster on the BigStitcher won the first prize!
#### **August 2018**
25 - 28
Laura @ EMBL Transcription and Chromatin{:target="_blank"} in Heidelberg.
Poster presentation on transcription regulation in the context of dosage compensation in C. elegans.
30 June - 08
Friedrich @ 3D developmental imaging EMBO practical course{:target="_blank"} at the Instituto Gulbenkian de Ciência in Oeiras, Portugal.
13 - 17
Friedrich @ C. elegans development, cell biology and gene expression{:target="_blank"} in Barcelona, Spain.
Poster on characterizing mechanisms of neuronal plasticity in the dauer-exiting C. elegans larva.
Microscopy club meeting about co-localization analysis of fluorescence images.
Laura @ Nuclear Organization & Function conference{:target="_blank"} in Cold Spring Harbor.
Poster presentation on transcription regulation in the context of dosage compensation in C. elegans.
01 - 30
Laura @ the lab of Sevinc Ercan{:target="_blank"} at NYU for a collaboration visit.
26 – 28
Dhana and Laura @ SignGene Winter School on Chromatin & Gene Expression in Israel.
Dhana and Laura presented their work.
12 – 14
The whole lab went to a lab retreat in Sintra, Portugal.
We discussed our work and had great talks by our guests Bruno Costa-Silva and Gaby Martins.
01 – 03
Dhana and Laura @BIOTEC Forum 2018 - Biophysics of the Nucleus{:target="_blank"} in Dresden.
Dhana and Laura presented their work.
31 – 01 Feb
Klim, Ella, and Marwan @ NEUBIAS conference in Szeged, Hungary.
Klim and Ella presented their work.
04 – 06
Dhana @ Quantitative Bioimaging Meeting in Göttingen.
03 – 16
Klim and Marwan @ MPI-CBG Hackathon in Dresden.
Klim is working on the integration of the Radial Symmetry node into KNIME. Marwan is joining the Fiji dev community.
10 – 15
Stephan and Nikita @ Society for Neuroscience Meeting (SFN) in Washington, DC.
07
Dhana and Friedrich @ Future Medicine 21017{:target="_blank"} in Berlin #futuremed17{:target="_blank"}.
02 - 08 Dec
Laura @ the lab of Sevinc Ercan{:target="_blank"} at NYU for a collaboration visit.
4 – 7
Dhana @ Seeing is Believing{:target="_blank"} at EMBL Heidelberg #eesimaging{:target="_blank"}.
20 – 29
Klim @ Hackathon at KNIME{:target="_blank"} in Konstanz.
Klim is working on the updated version of the Radial Symmetry plugin and applying neural networks to the detection problems.
14 – 16
Dhana, Ella, Klim and Laura @ MDC/FMP Phd Retreat{:target="_blank"} in Schorfheide.
Laura and Klim helped to organise this years retreat.
22 – 25
Klim @ Deep Learning Bootcamp 2017{:target="_blank"} in Dresden.
Poster on the computational approach for studying the transcription regulation in C. elegans.
05 – 07
Dhana @ Systems Biology of Human Disease Conference{:target="_blank"} in Heidelberg.
Dhana will give a short talk on p53 dynamics and stochastic gene expression in the DNA damage response.
21 – 25
Stephan, Laura & Ella @ International C. elegans Conference{:target="_blank"} in LA.
Ella will give a short talk and Laura will present a poster.
18 – 21
Dhana @ IMB Conference: Gene Regulation by the numbers{:target="_blank"} at the IMB in Mainz, Germany.
Poster on quantitaive imaging of transcriptional regulation by p53 in the DNA damage response.
14 – 17
Stephan @ Light Sheet Fluorescence Microscopy International Conference{:target="_blank"} in Singapore.
Invited Speaker
13 – 16
Laura @ Second international meeting on SMC proteins{:target="_blank"} in Yamagata, Japan.
Poster presentation on role of chromosome condensation on RNA Pol II and transcription.
06 – 08
Stephan, Laura, Dhana & Ella @ Berlin Summer Meeting 2017 - Imaging Gene Regulation from DNA to RNA to Protein{:target="_blank"}, #BSM2017{:target="_blank"} in Berlin.
09 – 12
Stephan, Nikita & David @ Focus on Microscopy{:target="_blank"} in Bordeaux, France.
Presentation: Big Stitcher - Efficient Alignment of Multi-Tile and Multi-View Lightsheet Data of Cleared Samples
22 – 24
Stephan, Nikita & Klim @ Symposium on Microscopy Imaging: From Molecules to Organisms{:target="_blank"} in Jena, Germany.
Presentation: Image Reconstruction and Application to Whole-Organism Transcription Imaging
05 – 07
Dhana @ SignGene Winter School{:target="_blank"} in Eilat, Israel.
Dhana is one of the main organizers of this year's Winter School of the german israeli graduate school SignGene. Invited international speakers will hold workshops ranging from proteomics to single cell techniques.
01 – 03
Stephan & David @ NEUBIAS2020 Syposium{:target="_blank"} in Lisbon, Portugal.
Presentation by Stephan: Reconstruction of Large Tiled Image Acquisitions using ImgLib2 and BigDataViewer
David presented the BigStitcher at the Open Software Lounge
26 – 03
Dhana @ CSHL Conference: Global regulation of Gene Expression{:target="_blank"} in Cold Spring Harbor Laboratory.
Poster on p53 single cell dynamics and their influence on target gene expression.
27 – 29
Klim @ Zeiss Hackathon{:target="_blank"} in Jena.
08 – 13
Klim & Ella @ Computer Science & Engineering Computer Vision School CSE{:target="_blank"} at the Hebrew University in Jerusalem, Israel.
05 – 16
Klim @ MPI-CBG Hackathon hackDD16{:target="_blank"} in Dresden.
02
Stephan @ 9th Annual NYU Developmental Genetics Symposium{:target="_blank"} in New York, USA.
Invited Presentation: Image Reconstruction and Application to Whole-Organism Transcription Imaging
14 - 18
The Preibisch and Woehler lab organized the first EU-Life Course on Biological Image Reconstruction and Analysis{:target="_blank"} at the MDC Berlin, Germany.
25 selected international students experienced a week full of exciting presentations and hands-on workshops by internationally renowned experts in the field of image analysis.
03
Laura @ The New York Academy of Sciences Genome Integrity Discussion Group{:target="_blank"} in New York.
22 – 25
Stephan, Ella, Klim and Dhana @ MDC/FMP Phd Retreat{:target="_blank"} in Schorfheide.
13 – 17
Laura @ CSH Epigenetics & Chromatin conference{:target="_blank"} in Cold Spring Harbor.
Poster presentation on role of chromosome condensation on RNA Pol II and transcription.
09 – 11 Oct
Laura @ the lab of Sevinc Ercan{:target="_blank"} at NYU for a collaboration visit.
01 – 06
Dhana @ SignGene Symposium{:target="_blank"} in Potsdam, Germany.
Short Talk and Poster presentation about p53 dependent gene expression.
31 – 2 Sep
Stephan @ 3rd Light Sheet Fluorescence Microscopy International Conference{:target="_blank"} at the University Sheffield{:target="_blank"} in Sheffield, UK.
Presentation and hands-on course on the reconstruction of multiview lightsheet data.
22 – 27
Varun and Klim @ Vision and Sports Summer School{:target="_blank"} in Prague, Czech Republic.
17 – 19
Stephan @ EMBO Practical Course "Lightsheet microscopy"{:target="_blank"} at the MPI-CBG{:target="_blank"} in Dresden, Germany.
Presentation and hands-on course on the reconstruction of multiview lightsheet data.
01 – 06
Ella @ Medical Imaging Summer School (MISS){:target="_blank"} in Sicily, Italy.
17 – 22
Varun @ International Computer Vision Summer School{:target="_blank"} in Sicily, Italy.
06 – 08
Stephan @ EMBO Practical Course "3D developmental imaging"{:target="_blank"} at the Gulbenkian Institute{:target="_blank"} in Oeiras, Portugal.
Presentation and hands-on course on the reconstruction of multiview lightsheet data.
27 – 30
Stephan and Ella @ the Mouse Development Workshop in Janelia{:target="_blank"}, USA.
Stephan gave a talk and a workshop and Ella presented her work in a poster.
13 – 17
Dhana @ Systems Biology of Human Disease (SBHD) Conference{:target="_blank"} at Harvard Medical School in Cambridge/Boston, USA.
Poster presentation on p53 signaling dynamics and stochastic gene expression.
06 – 10
Stephan @ EU-Life Meeting{:target="_blank"} at FAPESP{:target="_blank"} in São Paulo, Brazil.
01 – 03
We all were @ the MDC hosted the European Worm Meeting{:target="_blank"}.
Ella presented her work in a poster "Active Contour based Segmentation of C. elegans Electron Microscopy Data".
07 – 08
Stephan @ the BioImaging Symposium{:target="_blank"} of the LMU Munich, Germany.
14 – 16
Laura @ International Meeting of the the German Society for Cell Biology (DGZ){:target="_blank"} in Munich, Germany.
10 – 12
Laura @ Chromatin Dynamics Symposium{:target="_blank"} in Munich, Germany.
Feb 27 – Mar 05
Dhana @ SysBio2016 - Advanced Lecture Course on Systems Biology{:target="_blank"} in Innsbruck, Austria.
Poster presentation about experimental and mathematical approaches to correlate transcription factor dynamics and stochastic gene expression.
15 – 18
Stephan @ Genshagener Kreis{:target="_blank"} at Schloss Genshagen, Berlin, Germany.
14 – 17
Dhana @ SignGene Winter School{:target="_blank"} in Haifa, Israel.
Talk about "Building the bridge: From p53 dynamics to stochatic gene expression".
02 – 03
Stephan @ Molecular Biology of the Cell Course{:target="_blank"} at the Institute Pasteur{:target="_blank"} in Paris, France.
18 – 22
Laura @ FranceBioimaging Advanced Training (FBIAT) microscopy workshop{:target="_blank"} in Montpellier, France.
01 – 05
Laura and Stephan @ the annual BIMSB-NYU retreat{:target="_blank"} in New York, USA.
22 – 24
Stephan @ Bioimage Informatics Meeting{:target="_blank"} in Paris, France.
09 – 10
Stephan @ Biochemistry Department{:target="_blank"} in Oxford, UK.
29 – 30
Stephan @ the ETH Zürich{:target="_blank"} in Switzerland.
with a talk about lightsheet microscopy reconstruction.
14 – 16
Stephan @ Bioimage Informatics Conference 2015{:target="_blank"} of the NIST in Gaithersburg, MD, USA.
with his talk about the work on lightsheet microscopy reconstruction and the BigDataViewer.
6 – 7
Stephan @ the annual BIMSB-MRC retreat{:target="_blank"} in Berlin, Germany.
9 – 11
Stephan @ the BIMSB retreat{:target="_blank"} in Lindow, Germany.
12 – 15
Stephan @ the HFSP Meeting Awardee Meeting{:target="_blank"} at the Salk Institute{:target="_blank"} in San Diego, CA, USA.
29 – 3
Stephan organized a Hackathon at the BIMSB/MDC{:target="_blank"} in Berlin, Germany.
The focus of the hackathon was to adapt the Multiview Reconstruction software{:target="_blank"} so it is easier to call it externaly and to introduce more programmers into the general layout and functionality of the software.