Pathology Tumor Detection - problem with running the model

[mariamatusiskova]

Hi, I am a student currently working on my bachelor's thesis. My assignment involves exploring MONAI ZOO models, specifically the pre-trained Pathology Tumor Detection model. I have encountered some issues:

• The first problem was related to reading a lambda function in JSON format. I resolved it by creating a class to replace the lambda function, and this eliminated the error.
• The second issue is with the image from the CAMELYON-16 dataset, which is in TIFF format. The image is too large to open on my MacOS with 16 GB RAM and an M1 chip. I’m wondering how best to address this. Should I run it on another platform, like Azure ML? Or would it be better to divide the image into smaller parts/patches to process it in this model?
  The error:
  ERROR - Current run is terminating due to exception: Caught OpenSlideUnsupportedFormatError in DataLoader worker process 0.