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Copy pathPaenibacillus ICGEB2008 Central Carbon Metabolism.sbml
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Paenibacillus ICGEB2008 Central Carbon Metabolism.sbml
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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version1" level="3" version="1" fbc:required="false">
<model name="Paenibacillus Central Carbon Metabolism" substanceUnits="mole">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<div class="dc:bibliographicCitation">
<p>This model is described in the article: </p>
<div class="bibo:title">
Model assisted genome annotation reveals <i>Paenibacillus polymyxa</i> as an efficient symbiont and a potential host for fuels and chemicals production
</div>
<div class="bibo:authorList">Adhakha N, Pfau T, Ebenhöh O, Yazdani SS</div>
</div>
</body>
</notes>
<listOfCompartments>
<compartment id="STD" spatialDimensions="3" size="1" units="litre" constant="true"/>
</listOfCompartments>
<listOfSpecies>
<species metaid="_2__45__PG" id="_2__45__PG" name="2-phospho-D-glycerate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H4O7P1</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#_2__45__PG">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A58289"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:40467846"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00631"/>
<rdf:li rdf:resource="urn:miriam:cas:2553-59-5"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="WATER" id="WATER" name="H<SUB>2</SUB>O" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: H2O1</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#WATER">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15377"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:962"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00001"/>
<rdf:li rdf:resource="urn:miriam:cas:7732-18-5"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="PHOSPHO__45__ENOL__45__PYRUVATE" id="PHOSPHO__45__ENOL__45__PYRUVATE" name="phospho<i>enol</i>pyruvate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H2O6P1</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#PHOSPHO__45__ENOL__45__PYRUVATE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A58702"/>
<rdf:li rdf:resource="urn:miriam:cas:73-89-2"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:3674425"/>
<rdf:li rdf:resource="urn:miriam:cas:138-08-9"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00074"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="HCO3" id="HCO3" name="bicarbonate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C1H1O3</p>
<p>Charge: -1</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#HCO3">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:769"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A17544"/>
<rdf:li rdf:resource="urn:miriam:cas:71-52-3"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00288"/>
<rdf:li rdf:resource="urn:miriam:cas:144-55-8"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="PROTON" id="PROTON" name="H<SUP>+</SUP>" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: H1</p>
<p>Charge: 1</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#PROTON">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:1038"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15378"/>
<rdf:li rdf:resource="urn:miriam:cas:12408-02-5"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00080"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="CARBON__45__DIOXIDE" id="CARBON__45__DIOXIDE" name="CO<SUB>2</SUB>" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C1O2</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#CARBON__45__DIOXIDE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00011"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16526"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:280"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:280"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00011"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16526"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:280"/>
<rdf:li rdf:resource="urn:miriam:cas:124-38-9"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="GLC" id="GLC" name="&beta;-D-glucose" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H12O6</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#GLC">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:cas:50-99-7"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15903"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00221"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:64689"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ATP" id="ATP" name="ATP" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C10H12N5O13P3</p>
<p>Charge: -4</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ATP">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A30616"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:5461108"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15422"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00002"/>
<rdf:li rdf:resource="urn:miriam:cas:56-65-5"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ADP" id="ADP" name="ADP" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C10H12N5O10P2</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ADP">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A456216"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:7058055"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:7058055"/>
<rdf:li rdf:resource="urn:miriam:cas:20398-34-9"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00008"/>
<rdf:li rdf:resource="urn:miriam:cas:58-64-0"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="GLC__45__6__45__P" id="GLC__45__6__45__P" name="&beta;-D-glucose 6-phosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H11O9P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#GLC__45__6__45__P">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A58247"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:21604865"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C01172"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="SUC" id="SUC" name="succinate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H4O4</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#SUC">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A30031"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:160419"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00001205"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00042"/>
<rdf:li rdf:resource="urn:miriam:cas:110-15-6"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="CO__45__A" id="CO__45__A" name="coenzyme A" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C21H32N7O16P3S1</p>
<p>Charge: -4</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#CO__45__A">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57287"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:25113190"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:25113190"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00007258"/>
<rdf:li rdf:resource="urn:miriam:cas:85-61-0"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00010"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="SUC__45__COA" id="SUC__45__COA" name="succinyl-CoA" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C25H35N7O19P3S1</p>
<p>Charge: -5</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#SUC__45__COA">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:25245777"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:25245777"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00091"/>
<rdf:li rdf:resource="urn:miriam:cas:604-98-8"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="Pi" id="Pi" name="phosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: H1O4P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#Pi">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:knapsack:C00007408"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00009"/>
<rdf:li rdf:resource="urn:miriam:cas:14265-44-2"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="NAD" id="NAD" name="NAD<sup>+</sup>" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C21H26N7O14P2</p>
<p>Charge: -1</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#NAD">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57540"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:15938971"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:15938971"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00003"/>
<rdf:li rdf:resource="urn:miriam:cas:53-84-9"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="BUTANEDIOL" id="BUTANEDIOL" name="BUTANEDIOL" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H10O2</p>
<p>Charge: 0</p>
</body>
</notes>
</species>
<species metaid="NADH" id="NADH" name="NADH" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C21H27N7O14P2</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#NADH">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57945"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:21604869"/>
<rdf:li rdf:resource="urn:miriam:cas:58-68-4"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00004"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="CPD__45__10353" id="CPD__45__10353" name="(R)-acetoin" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H8O2</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#CPD__45__10353">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:439314"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00810"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15686"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ACETALD" id="ACETALD" name="acetaldehyde" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C2H4O1</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ACETALD">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:177"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15343"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00084"/>
<rdf:li rdf:resource="urn:miriam:umbbd.compound:c0160"/>
<rdf:li rdf:resource="urn:miriam:cas:75-07-0"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ACETYL__45__COA" id="ACETYL__45__COA" name="acetyl-CoA" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C23H34N7O17P3S1</p>
<p>Charge: -4</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ACETYL__45__COA">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57288"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:45266541"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00007259"/>
<rdf:li rdf:resource="urn:miriam:cas:72-89-9"/>
<rdf:li rdf:resource="urn:miriam:umbbd.compound:c0031"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00024"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ALPHA__45__GLC__45__6__45__P" id="ALPHA__45__GLC__45__6__45__P" name="&alpha;-D-glucose 6-phosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H11O9P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ALPHA__45__GLC__45__6__45__P">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A58225"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:21604864"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00668"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="FRUCTOSE__45__6P" id="FRUCTOSE__45__6P" name="D-fructose 6-phosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H11O9P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#FRUCTOSE__45__6P">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57634"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00007305"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:21604863"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00085"/>
<rdf:li rdf:resource="urn:miriam:cas:643-13-0"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE" id="D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE" name="6-phospho D-glucono-1,5-lactone" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H9O9P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57955"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:46926335"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C01236"/>
<rdf:li rdf:resource="urn:miriam:cas:2641-81-8"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="CPD__45__2961" id="CPD__45__2961" name="6-phospho D-gluconate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H10O10P1</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#CPD__45__2961">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A58759"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:36688186"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00345"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="OXALACETIC_ACID" id="OXALACETIC_ACID" name="oxaloacetate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H2O5</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#OXALACETIC_ACID">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:164550"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16452"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00036"/>
<rdf:li rdf:resource="urn:miriam:cas:328-42-7"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="GLYCERATE" id="GLYCERATE" name="GLYCERATE" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H5O4</p>
<p>Charge: -1</p>
</body>
</notes>
</species>
<species metaid="G3P" id="G3P" name="3-phospho-D-glycerate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H4O7P1</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#G3P">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A58272"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:25245548"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00197"/>
<rdf:li rdf:resource="urn:miriam:cas:820-11-1"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ACETYL__45__P" id="ACETYL__45__P" name="acetylphosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C2H3O5P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ACETYL__45__P">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:4183249"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A22191"/>
<rdf:li rdf:resource="urn:miriam:cas:19926-71-7"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00227"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="MAL" id="MAL" name="(<i>S</i>)-malate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H4O5</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#MAL">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:cas:6915-15-7"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:5459792"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15589"/>
<rdf:li rdf:resource="urn:miriam:cas:97-67-6"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00149"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="FUM" id="FUM" name="fumarate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H2O4</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#FUM">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:knapsack:C00001183"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:5460307"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A29806"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00122"/>
<rdf:li rdf:resource="urn:miriam:cas:110-17-8"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="PYRUVATE" id="PYRUVATE" name="pyruvate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H3O3</p>
<p>Charge: -1</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#PYRUVATE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:107735"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00001200"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15361"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00022"/>
<rdf:li rdf:resource="urn:miriam:cas:127-17-3"/>
<rdf:li rdf:resource="urn:miriam:umbbd.compound:c0159"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="CIT" id="CIT" name="citrate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H5O7</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#CIT">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:31348"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00007619"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16947"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00158"/>
<rdf:li rdf:resource="urn:miriam:cas:77-92-9"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="CIS__45__ACONITATE" id="CIS__45__ACONITATE" name="<i>cis</i>-aconitate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H3O6</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#CIS__45__ACONITATE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:knapsack:C00001177"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:5459816"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16383"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00417"/>
<rdf:li rdf:resource="urn:miriam:cas:585-84-2"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="BUTANOL" id="BUTANOL" name="n-butanol" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H10O1</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#BUTANOL">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A28885"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:263"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C06142"/>
<rdf:li rdf:resource="urn:miriam:cas:71-36-3"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="BUTANAL" id="BUTANAL" name="butanal" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C4H8O1</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#BUTANAL">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:261"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15743"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C01412"/>
<rdf:li rdf:resource="urn:miriam:cas:123-72-8"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="AMP" id="AMP" name="AMP" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C10H12N5O7P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#AMP">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:15938965"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A456215"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:15938965"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00020"/>
<rdf:li rdf:resource="urn:miriam:cas:61-19-8"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="ACET" id="ACET" name="acetate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C2H3O2</p>
<p>Charge: -1</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#ACET">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:175"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A30089"/>
<rdf:li rdf:resource="urn:miriam:cas:64-19-7"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00033"/>
<rdf:li rdf:resource="urn:miriam:cas:71-50-1"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="PROPANE__45__1__45__2__45__DIOL" id="PROPANE__45__1__45__2__45__DIOL" name="PROPANE-1-2-DIOL" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H8O2</p>
<p>Charge: 0</p>
</body>
</notes>
</species>
<species metaid="ACETOL" id="ACETOL" name="ACETOL" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H6O2</p>
<p>Charge: 0</p>
</body>
</notes>
</species>
<species metaid="DIHYDROXYACETONE" id="DIHYDROXYACETONE" name="dihydroxyacetone" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H6O3</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#DIHYDROXYACETONE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:670"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16016"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00184"/>
<rdf:li rdf:resource="urn:miriam:cas:96-26-4"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="DIHYDROXY__45__ACETONE__45__PHOSPHATE" id="DIHYDROXY__45__ACETONE__45__PHOSPHATE" name="dihydroxyacetone phosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H5O6P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#DIHYDROXY__45__ACETONE__45__PHOSPHATE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57642"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:4643300"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:4643300"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00111"/>
<rdf:li rdf:resource="urn:miriam:cas:57-04-5"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="DPG" id="DPG" name="1,3-bisphospho-D-glycerate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H4O10P2</p>
<p>Charge: -4</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#DPG">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:23405621"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00236"/>
<rdf:li rdf:resource="urn:miriam:cas:1981-49-3"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="GLYCEROL" id="GLYCEROL" name="glycerol" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H8O3</p>
<p>Charge: 0</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#GLYCEROL">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:753"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A17754"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00116"/>
<rdf:li rdf:resource="urn:miriam:cas:56-81-5"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="GLYCEROL__45__3P" id="GLYCEROL__45__3P" name="<i>sn</i>-glycerol-3-phosphate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C3H7O6P1</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#GLYCEROL__45__3P">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A57597"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:7048686"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00093"/>
<rdf:li rdf:resource="urn:miriam:cas:57-03-4"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="THREO__45__DS__45__ISO__45__CITRATE" id="THREO__45__DS__45__ISO__45__CITRATE" name="D-<i>threo</i>-isocitrate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C6H5O7</p>
<p>Charge: -3</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#THREO__45__DS__45__ISO__45__CITRATE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00451"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00001188"/>
<rdf:li rdf:resource="urn:miriam:cas:320-77-4"/>
<rdf:li rdf:resource="urn:miriam:cas:30810-51-6"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:5459771"/>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A15562"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="_2__45__KETOGLUTARATE" id="_2__45__KETOGLUTARATE" name="2-oxoglutarate" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p>FORMULA: C5H4O5</p>
<p>Charge: -2</p>
</body>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#_2__45__KETOGLUTARATE">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:chebi:CHEBI&3A16810"/>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:164533"/>
<rdf:li rdf:resource="urn:miriam:knapsack:C00000769"/>
<rdf:li rdf:resource="urn:miriam:kegg.compound:C00026"/>
<rdf:li rdf:resource="urn:miriam:cas:328-50-7"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="S__45__3__45__HYDROXYBUTANOYL__45__COA" id="S__45__3__45__HYDROXYBUTANOYL__45__COA" name="(S)-3-hydroxybutanoyl-CoA" compartment="STD" initialAmount="1" substanceUnits="mole" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">