Releases: RWilton/Arioc
Arioc v1.24
Notes for Arioc v1.24:
The current build is v1.24.2351.18110.
New features
- read-length distribution statistics in the AriocE (read encoding) component
- better memory management (larger batch sizes, more detailed error reporting) in the nongapped aligner component of AriocU and AriocP
Bug fixes
- AriocP: emit invalid FLAG bits for paired-end reads with one mate having exactly one mapping and the opposite mate having two or more mappings
- AriocU, AriocP: emit invalid XM (methylation context) map when a read's reverse complement maps to the reverse complement of the start of the reference sequence
- AriocP: emit incorrect MAPQ for paired-end mappings with dovetail orientation
Downloads
AriocSetup.msi: Windows binaries and examples
Arioc.w.124.zip: Windows source code
Arioc.x.124.zip: Linux source code
Arioc.RQA.124.zip: Linux examples
Arioc v1.23
Arioc v1.23 adds support for 32-bit seed-and-extend lookup table hashing.
AriocSetup.msi: Windows binaries and examples
Arioc.w.123.zip: Windows source code only
Arioc.x.123.zip: Linux source code
Arioc.RQA.123.zip: Linux examples
Arioc v1.22
Arioc v1.22 adds support for 64-bit PowerPC architecture.
(Thanks to Dr. Ruzhu Chen [IBM] and Dr. Edward S. Chen [Baylor College of Medicine] for letting us test Arioc on a Power8 system with four Nvidia P100 GPUs.)
Arioc v1.21
Arioc v1.21 installation archives and source code
Arioc.RQA.121.zip
: Linux examples
Arioc.w.121.zip
: Windows source code only
Arioc.x.121.zip
: Linux source code
AriocSetup.msi
: Windows binaries and examples
Arioc v1.21 includes support for BS-seq alignments. This release also adds sample configurations for alignments with the human reference genome.
Arioc v1.20
Arioc v1.20 installation archives and source code:
AriocSetup.msi: Windows binaries and examples
Arioc.w.120.zip: Windows source code only
Arioc.x.120.zip: Linux source code
Arioc.RQA.120.zip: Linux examples
Arioc v1.10
Arioc v1.10 installation archives and source code:
AriocSetup.msi: Windows binaries and examples
Arioc.w.110.zip: Windows source code only
Arioc.x.110.zip: Linux source code
Arioc.RQA.110.zip: Linux examples
Arioc v1.04
Arioc v1.04 executable binaries, examples, and source code:
AriocSetup.msi: Windows binaries and examples
Arioc.Linux.zip: Linux binaries and examples
Arioc.104.zip: source code
Arioc v1.02
Removed experimental seed-coverage code from AriocP implementation.
Arioc v1.01
Arioc v1.01 executable binaries and examples:
AriocSetup.msi: Windows
Arioc.Linux.zip: Linux