.pre-commit-config.yaml

---
# See https://pre-commit.com for more information
# See https://pre-commit.com/hooks.html for more hooks
repos:
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
    -   id: trailing-whitespace
    -   id: check-yaml
    -   id: check-added-large-files
    -   id: check-ast
    -   id: check-case-conflict
    -   id: check-json
    -   id: check-merge-conflict
    -   id: check-toml
    -   id: end-of-file-fixer
    -   id: mixed-line-ending

-   repo: https://github.com/codespell-project/codespell
    rev: v2.3.0
    hooks:
    -   id: codespell
        additional_dependencies:
        -   tomli

-   repo: https://github.com/pycqa/isort
    rev: 5.13.2
    hooks:
    -   id: isort
        args: [--profile, black]

-   repo: https://github.com/psf/black-pre-commit-mirror
    rev: 24.10.0
    hooks:
    -   id: black

-   repo: https://github.com/jumanjihouse/pre-commit-hook-yamlfmt
    rev: 0.2.3
    hooks:
    -   id: yamlfmt
        args: [--mapping, '4', --sequence, '4', --offset, '0']

-   repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
    rev: v2.14.0
    hooks:
    -   id: pretty-format-toml
        args: [--autofix, --indent, '4']

-   repo: https://github.com/pycqa/flake8
    rev: 7.1.1
    hooks:
    -   id: flake8

-   repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.12.1
    hooks:
    -   id: mypy
        additional_dependencies: [types-PyYAML, types-Jinja2, types-click]
        files: neurodocker
        args: [--config-file, pyproject.toml, --install-types]