- FIX use --transform in freesurfer's template to generalize across freesurfer versions to strip leading
freesurfer/folder #626 (@mvdoc) - FIX remove comment from freesurfer env line #622 (@mvdoc)
- FIX add default header and entrypoint to docker and singularity files #623 (@mvdoc)
- [BOT] update pre-commit hooks #627 (@Remi-Gau @github-actions[bot])
- Fix typo of "software" #624 (@yarikoptic)
- [BOT] update pre-commit hooks #621 (@Remi-Gau @github-actions[bot])
- @github-actions[bot]
- Matteo Visconti di Oleggio Castello (@mvdoc)
- Remi Gau (@Remi-Gau)
- Yaroslav Halchenko (@yarikoptic)
- Bump actions/checkout from 3 to 4 #582 (@dependabot[bot])
- Bump actions/checkout from 3 to 4 #573 (@dependabot[bot])
- Bump actions/stale from 5 to 8 #560 (@dependabot[bot])
- Bump actions/checkout from 2 to 3 #557 (@dependabot[bot])
- Bump actions/setup-python from 2 to 4 #556 (@dependabot[bot])
- [BOT] update pre-commit hooks #616 (@Remi-Gau @github-actions[bot])
- [BOT] update pre-commit hooks #614 (@Remi-Gau @github-actions[bot])
- make scripts executable after build #615 (@stebo85)
- [BOT] update pre-commit hooks #613 (@Remi-Gau @github-actions[bot])
- Use HTTPS for NeuroDebian APT listing urls #612 (@TheChymera)
- [BOT] update pre-commit hooks #610 (@Remi-Gau @github-actions[bot])
- [FIX] Update branch in update_precommit_hooks.yml #609 (@Remi-Gau)
- [ENH] package with hatchling and switch to pyproject.toml #607 (@Remi-Gau)
- [MAINT] update linting config and CI #604 (@Remi-Gau)
- fixed flake8 errors from #597 #598 (@Vbitz)
- Added "--add" command line option to add tar files as docker layers. #597 (@Vbitz)
- added versions to Library PATH #593 (@stebo85)
- update matlabmcr #592 (@stebo85)
- [FIX] add url bids validator #591 (@Remi-Gau)
- [DOC] add list of supported software #587 (@Remi-Gau)
- [ENH] add templates bids_validator #586 (@Remi-Gau)
- [MAINT] test build jq #589 (@Remi-Gau)
- [ENH] test on python 3.12 #588 (@Remi-Gau)
- Update fsl.yaml #583 (@stebo85)
- [DOC] update doc #569 (@Remi-Gau)
- [ENH] implement more recent mrtrix version #579 (@Remi-Gau)
- Update examples.rst #578 (@stebo85)
- added FSL interactivity note #576 (@stebo85)
- Include FSL license auto-yes example #575 (@stebo85)
- [MAINT] Update stale.yml #577 (@Remi-Gau)
- [FIX] install the proper dependencies for doc build #574 (@Remi-Gau)
- [DOC] auto doc main CLI #463 (@Remi-Gau)
- [FIX] use local var for software name in bootstrap workflow #572 (@Remi-Gau)
- [FIX] use env variable in bootstrap workflow #571 (@Remi-Gau)
- [INFRA] add possibility to only build a single workflow #570 (@Remi-Gau)
- [MAINT] test build of conda as part of the bootstrap workflow #566 (@Remi-Gau)
- [MAINT] minimize file changes that can trigger the bootstrap workflow #564 (@Remi-Gau)
- set python version for format job #563 (@stebo85)
- Add mamba option to miniconda #562 (@Shotgunosine)
- [MAINT] remove oldest distro in automated build testing #559 (@Remi-Gau)
- [MAINT] split format checking and testing in CI #554 (@Remi-Gau)
- [MAINT] Simplify type annotations #551 (@Remi-Gau)
- apply isort and all pre-commit hooks #549 (@Remi-Gau)
- Mcr bug #471 (@stebo85)
- Add codespell: config, pre-commit, workflow + 1 typo fixed #544 (@yarikoptic @stebo85)
- added freesurfer 7.3.2 #547 (@stebo85)
- add fsl 6.0.7.1 #543 (@stebo85)
- added freesurfer 7.4.1 #542 (@hjbockholt)
- Fixing my update for mcr2023a #540 (@dnkennedy)
- Update matlabmcr.yaml #539 (@dnkennedy)
- Update years to have full range of years of the project #534 (@yarikoptic)
- Update cat #533 (@stebo85)
- Change name of parent directory (@kaczmarj)
- Upgrade intuit auto to 11.1.6 (most recent) #617 (@yarikoptic)
- Bump actions/setup-python from 4 to 5 #594 (@dependabot[bot])
- Bump actions/stale from 8 to 9 #595 (@dependabot[bot])
- @dependabot[bot]
- @github-actions[bot]
- David Kennedy (@dnkennedy)
- Dylan Nielson (@Shotgunosine)
- H. Jeremy Bockholt (@hjbockholt)
- Horea Christian (@TheChymera)
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- Joshua Scarsbrook (@Vbitz)
- Remi Gau (@Remi-Gau)
- Steffen Bollmann (@stebo85)
- Yaroslav Halchenko (@yarikoptic)
- Afni missing dependencies for suma #512 (@stebo85)
- modifying value for entry point to allow -arg or --arg #515 (@djarecka @kaczmarj)
- Mcr missing deb libxp6 #526 (@stebo85)
- NEW: Add support for FSL version 6.0.6 onwards #527 (@ghisvail)
- Enable build of docs with Sphinx 6 #525 (@ghisvail)
- Add FSL version 6.0.5.2 #523 (@ghisvail)
- Update ants.yaml #521 (@araikes @kaczmarj)
- [FIX] fix link to build dashboard #517 (@Remi-Gau)
- Update cli.rst #514 (@sooyounga @djarecka)
- updated version tags and added latest tag clarification to docs #516 (@sooyounga)
- Minc install from deb and rpm #509 (@stebo85)
- fix: repo info (@satra)
- [INFRA] test docker builds in CI #487 (@Remi-Gau @pre-commit-ci[bot] @satra)
- do not install sphinx 6.x #505 (@kaczmarj)
- add bad versions to et file #502 (@satra)
- [TESTS] check black style in github actions #501 (@kaczmarj)
- Update README.md (@djarecka)
- add workflow token (@satra)
- add commit agent (@satra)
- add all changed files (@satra)
- Update bootstrap.yml (@satra)
- simplify git commit (@satra)
- allow writing actions (@satra)
- remove on demand (@satra)
- fix docs build (@satra)
- fix: syntax (@satra)
- testing sphinx build (@satra)
- @araikes
- @pre-commit-ci[bot]
- Dorota Jarecka (@djarecka)
- Ghislain Vaillant (@ghisvail)
- Jakub Kaczmarzyk (@kaczmarj)
- Remi Gau (@Remi-Gau)
- Satrajit Ghosh (@satra)
- Sooyoung Ahn (@sooyounga)
- Steffen Bollmann (@stebo85)
- fix the types in --copy and --entrypoint #500 (@kaczmarj)
- add long_description to setup.cfg #465 (@kaczmarj)
- [FIX] add regression test for 498 #499 (@Remi-Gau)
- FIX: skip minification tests on M1/M2 macs and run them otherwise #497 (@kaczmarj)
- Add/ants24x #473 (@araikes @kaczmarj)
- fix: auto setup #496 (@satra)
- enh: add release workflow #495 (@satra)
- remove empty lines #488 (@satra)
- FIX: --version output in containers #493 (@kaczmarj)
- fix: remove py 3.7 and add apptainer 1.1.5 #490 (@satra)
- fix: adjust optionEatAll for click >= 8 #492 (@satra)
- update pre-commit #482 (@Remi-Gau)