From 74ca010fc2c1012cc55e308ba1e5b64f05a223ff Mon Sep 17 00:00:00 2001
From: Repronim neurodocker bot <no-reply@repronim.org>
Date: Thu, 5 Oct 2023 01:19:41 +0000
Subject: [PATCH] added new workflows

---
 .github/workflows/afni.yml       | 64 +++++++++++++++++++++++
 .github/workflows/ants.yml       | 62 ++++++++++++++++++++++
 .github/workflows/cat12.yml      | 63 +++++++++++++++++++++++
 .github/workflows/convert3d.yml  | 62 ++++++++++++++++++++++
 .github/workflows/dcm2niix.yml   | 62 ++++++++++++++++++++++
 .github/workflows/freesurfer.yml | 60 ++++++++++++++++++++++
 .github/workflows/fsl.yml        | 62 ++++++++++++++++++++++
 .github/workflows/matlabmcr.yml  | 62 ++++++++++++++++++++++
 .github/workflows/miniconda.yml  | 60 ++++++++++++++++++++++
 .github/workflows/mricron.yml    | 62 ++++++++++++++++++++++
 .github/workflows/mrtrix3.yml    | 62 ++++++++++++++++++++++
 .github/workflows/spm12.yml      | 62 ++++++++++++++++++++++
 docs/README.md                   | 88 ++++++++++++++++++++++++++++++++
 13 files changed, 831 insertions(+)
 create mode 100644 .github/workflows/afni.yml
 create mode 100644 .github/workflows/ants.yml
 create mode 100644 .github/workflows/cat12.yml
 create mode 100644 .github/workflows/convert3d.yml
 create mode 100644 .github/workflows/dcm2niix.yml
 create mode 100644 .github/workflows/freesurfer.yml
 create mode 100644 .github/workflows/fsl.yml
 create mode 100644 .github/workflows/matlabmcr.yml
 create mode 100644 .github/workflows/miniconda.yml
 create mode 100644 .github/workflows/mricron.yml
 create mode 100644 .github/workflows/mrtrix3.yml
 create mode 100644 .github/workflows/spm12.yml
 create mode 100644 docs/README.md

diff --git a/.github/workflows/afni.yml b/.github/workflows/afni.yml
new file mode 100644
index 00000000..59ad1587
--- /dev/null
+++ b/.github/workflows/afni.yml
@@ -0,0 +1,64 @@
+# This is file is automatically generated. Do not edit.
+name: 'afni'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  afni:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['latest']
+        method: ['binaries', 'source']
+        afni_python: ['true', 'false']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --afni \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            install_python3=${{ matrix.afni_python }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/ants.yml b/.github/workflows/ants.yml
new file mode 100644
index 00000000..978817a6
--- /dev/null
+++ b/.github/workflows/ants.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'ants'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  ants:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['2.4.3', '2.4.2', '2.4.1', '2.3.4', '2.3.2', '2.3.1', '2.3.0', '2.2.0', '2.1.0', '2.0.3', '2.0.0']
+        method: ['binaries', 'source']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --ants \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/cat12.yml b/.github/workflows/cat12.yml
new file mode 100644
index 00000000..a1565f93
--- /dev/null
+++ b/.github/workflows/cat12.yml
@@ -0,0 +1,63 @@
+# This is file is automatically generated. Do not edit.
+name: 'cat12'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  cat12:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['r1933_R2017b', 'r2166_R2017b']
+        method: ['binaries']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --matlabmcr method='binaries' version='2017b' \
+            --cat12 \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/convert3d.yml b/.github/workflows/convert3d.yml
new file mode 100644
index 00000000..59ca85be
--- /dev/null
+++ b/.github/workflows/convert3d.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'convert3d'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  convert3d:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['nightly', '1.0.0']
+        method: ['binaries']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --convert3d \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/dcm2niix.yml b/.github/workflows/dcm2niix.yml
new file mode 100644
index 00000000..c77ccec4
--- /dev/null
+++ b/.github/workflows/dcm2niix.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'dcm2niix'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  dcm2niix:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['latest', 'v1.0.20201102', 'v1.0.20200331', 'v1.0.20190902']
+        method: ['binaries', 'source']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --dcm2niix \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/freesurfer.yml b/.github/workflows/freesurfer.yml
new file mode 100644
index 00000000..b16f27b7
--- /dev/null
+++ b/.github/workflows/freesurfer.yml
@@ -0,0 +1,60 @@
+# This is file is automatically generated. Do not edit.
+name: 'freesurfer'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  freesurfer:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['7.4.1', '7.3.2', '7.3.1', '7.3.0', '7.2.0', '7.1.1', '7.1.1-min', '7.1.0', '6.0.1', '6.0.0', '6.0.0-min']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --freesurfer \
+            version=${{ matrix.version }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/fsl.yml b/.github/workflows/fsl.yml
new file mode 100644
index 00000000..03fd4b59
--- /dev/null
+++ b/.github/workflows/fsl.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'fsl'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  fsl:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['6.0.7.4', '6.0.7.1', '6.0.6.4', '6.0.6.3', '6.0.6.2', '6.0.6.1', '6.0.6', '6.0.5.2', '6.0.5.1', '6.0.5', '6.0.4', '6.0.3', '6.0.2', '6.0.1', '6.0.0', '5.0.11', '5.0.10', '5.0.9', '5.0.8']
+        method: ['binaries']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --fsl \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/matlabmcr.yml b/.github/workflows/matlabmcr.yml
new file mode 100644
index 00000000..25ea4847
--- /dev/null
+++ b/.github/workflows/matlabmcr.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'matlabmcr'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  matlabmcr:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['2023a', '2021b', '2021a', '2020b', '2020a', '2019b', '2019a', '2018b', '2018a', '2017b', '2017a', '2016b', '2016a', '2015b', '2015aSP1', '2015a', '2014a', '2014b', '2013b', '2013a', '2012b', '2012a', '2010a']
+        method: ['binaries']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --matlabmcr \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/miniconda.yml b/.github/workflows/miniconda.yml
new file mode 100644
index 00000000..e2e1ec61
--- /dev/null
+++ b/.github/workflows/miniconda.yml
@@ -0,0 +1,60 @@
+# This is file is automatically generated. Do not edit.
+name: 'miniconda'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  miniconda:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['latest']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --miniconda \
+            version=${{ matrix.version }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/mricron.yml b/.github/workflows/mricron.yml
new file mode 100644
index 00000000..a9864581
--- /dev/null
+++ b/.github/workflows/mricron.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'mricron'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  mricron:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['1.0.20190902', '1.0.20190410', '1.0.20181114', '1.0.20180614', '1.0.20180404', '1.0.20171220']
+        method: ['binaries']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --mricron \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/mrtrix3.yml b/.github/workflows/mrtrix3.yml
new file mode 100644
index 00000000..c547c085
--- /dev/null
+++ b/.github/workflows/mrtrix3.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'mrtrix3'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  mrtrix3:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['3.0.4', '3.0.3', '3.0.2', '3.0.1', '3.0.0']
+        method: ['binaries', 'source']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --mrtrix3 \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/.github/workflows/spm12.yml b/.github/workflows/spm12.yml
new file mode 100644
index 00000000..c389dfb5
--- /dev/null
+++ b/.github/workflows/spm12.yml
@@ -0,0 +1,62 @@
+# This is file is automatically generated. Do not edit.
+name: 'spm12'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches: ["test_docker_build"]
+
+jobs:
+
+  spm12:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7']
+        version: ['r7771', 'r7487', 'r7219', 'r6914', 'r6685', 'r6472', 'r6225']
+        method: ['binaries']
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install neurodocker
+        run: python -m pip install --editable .[dev]
+
+      - name: Generate Dockerfile
+        run: |
+
+          apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim')
+          if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="apt"
+          fi
+
+          yum_based=('fedora:36', 'centos:7')
+          if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
+            pkg_manager="yum"
+          fi
+
+          neurodocker \
+            generate docker \
+            --base-image=${{ matrix.base_image }} \
+            --pkg-manager=${pkg_manager} \
+            --yes \
+            --spm12 \
+            version=${{ matrix.version }} \
+            method=${{ matrix.method }} \
+            > Dockerfile_tmp
+
+          cat Dockerfile_tmp
+
+      - name: Build the Docker image
+        run: docker build -f Dockerfile_tmp .
diff --git a/docs/README.md b/docs/README.md
new file mode 100644
index 00000000..f739579a
--- /dev/null
+++ b/docs/README.md
@@ -0,0 +1,88 @@
+<!-- This page is generated automatically. Do not edit manually. -->
+# Build dashboard
+
+- [afni](#afni)
+- [ants](#ants)
+- [cat12](#cat12)
+- [convert3d](#convert3d)
+- [dcm2niix](#dcm2niix)
+- [freesurfer](#freesurfer)
+- [fsl](#fsl)
+- [matlabmcr](#matlabmcr)
+- [mricron](#mricron)
+- [mrtrix3](#mrtrix3)
+- [spm12](#spm12)
+- [miniconda](#miniconda)
+
+## afni
+
+[afni workflow](https://github.com/ReproNim/neurodocker/actions/workflows/afni.yml)
+
+![afni build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=afni)
+
+## ants
+
+[ants workflow](https://github.com/ReproNim/neurodocker/actions/workflows/ants.yml)
+
+![ants build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=ants)
+
+## cat12
+
+[cat12 workflow](https://github.com/ReproNim/neurodocker/actions/workflows/cat12.yml)
+
+![cat12 build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=cat12)
+
+## convert3d
+
+[convert3d workflow](https://github.com/ReproNim/neurodocker/actions/workflows/convert3d.yml)
+
+![convert3d build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=convert3d)
+
+## dcm2niix
+
+[dcm2niix workflow](https://github.com/ReproNim/neurodocker/actions/workflows/dcm2niix.yml)
+
+![dcm2niix build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=dcm2niix)
+
+## freesurfer
+
+[freesurfer workflow](https://github.com/ReproNim/neurodocker/actions/workflows/freesurfer.yml)
+
+![freesurfer build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=freesurfer)
+
+## fsl
+
+[fsl workflow](https://github.com/ReproNim/neurodocker/actions/workflows/fsl.yml)
+
+![fsl build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=fsl)
+
+## matlabmcr
+
+[matlabmcr workflow](https://github.com/ReproNim/neurodocker/actions/workflows/matlabmcr.yml)
+
+![matlabmcr build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=matlabmcr)
+
+## mricron
+
+[mricron workflow](https://github.com/ReproNim/neurodocker/actions/workflows/mricron.yml)
+
+![mricron build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=mricron)
+
+## mrtrix3
+
+[mrtrix3 workflow](https://github.com/ReproNim/neurodocker/actions/workflows/mrtrix3.yml)
+
+![mrtrix3 build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=mrtrix3)
+
+## spm12
+
+[spm12 workflow](https://github.com/ReproNim/neurodocker/actions/workflows/spm12.yml)
+
+![spm12 build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=spm12)
+
+## miniconda
+
+[miniconda workflow](https://github.com/ReproNim/neurodocker/actions/workflows/miniconda.yml)
+
+![miniconda build status](http://github-actions.40ants.com/ReproNim/neurodocker/matrix.svg?branch=test_docker_build&only=miniconda)
+