semmed-exclude-list-model.yaml

---
id: https://w3id.org/biolink/biolink-model
name: semmed-exclude-list-model
description: Model that represents a semmed exclude list object
license: https://creativecommons.org/publicdomain/zero/1.0/

# Version should be kept in sync with primary Git repository release tag

version: 3.5.4

## ------------
##
## PREFIXES
## ------------
# CURIE namespaces (prefixes/base URI's) mappings of prefixes used in the body of the Biolink Model specification
# are resolved using a specific precedence order, for use in the generation of the Biolink Model context.jsonld
# mappings to namespaces. Any prefixes encountered in the Biolink Model but not resolved by the following
# precedence sources, are anonymously declared by linkml as http://example.org/UNKNOWN/ rooted base URI's
# which should ideally be repaired in one of the precedence lists.
#
# 1. The following 'prefixes:' delimited list has first precedence in resolution.
#
prefixes:
  biolink: 'https://w3id.org/biolink/vocab/'
  linkml: 'https://w3id.org/linkml/'
  infores: 'https://w3id.org/biolink/vocab/'
  sel: 'https://w3id.org/biolink/vocab/'


imports:
  - linkml:types

default_prefix: sel
default_range: string

default_curi_maps:
  - obo_context
  - idot_context
  - monarch_context
  - semweb_context

emit_prefixes:
  - rdf
  - rdfs
  - xsd
  - skos
  - oboInOwl

classes:
  ExcludeListContainer:
    tree_root: true
    description: >-
      A collection of exclusion objects
    slots:
      - excluded_semmedb_records

  ExcludedSemmedbRecord:
    slots:
      - semmed_subject_code
      - semmed_subject_t_code
      - semmed_predicate
      - semmed_object_code
      - semmed_object_t_code
      - exclusion_type

slots:

  semmed_subject_code:
    description: >-
      The subject code of the semmeddb record
    range: string

  semmed_subject_t_code:
    description: >-
      The subject t code of the semmeddb record
    range: string

  semmed_predicate:
    description: >-
      The predicate of the semmeddb record
    range: string

  semmed_object_code:
    description: >-
      The object code of the semmeddb record
    range: string

  semmed_object_t_code:
    description: >-
      The object t code of the semmeddb record
    range: string

  exclusion_type:
    description: >-
      The notes describing the kind of exclusion that generated this record.
    range: string

  excluded_semmedb_records:
    description: >-
      The list of semmeddb records that are excluded
    multivalued: true
    range: ExcludedSemmedbRecord
    inlined_as_list: true