-
Notifications
You must be signed in to change notification settings - Fork 3
/
Copy pathpaper.bib
163 lines (146 loc) · 5.89 KB
/
paper.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
@article{borisjuk2012surveying,
title={Surveying the plant’s world by magnetic resonance imaging},
author={Borisjuk, Ljudmilla and Rolletschek, Hardy and Neuberger, Thomas},
journal={The Plant Journal},
volume={70},
number={1},
pages={129--146},
year={2012},
publisher={Wiley Online Library},
doi = {10.1111/j.1365-313x.2012.04927.x}
}
@article{sidi2019multiscale,
title={Multiscale NMR investigations of two anatomically contrasted genotypes of sorghum under watered conditions and during drought stress},
author={Sidi-Boulenouar, Rahima and Cardoso, Ma{\"\i}da and Coillot, Christophe and Rousset, S{\'e}bastien and Nativel, Eric and Charbit, Alain and Baptiste, Christelle and Alibert, Eric and Gatineau, Fr{\'e}d{\'e}ric and Verdeil, Jean-Luc and others},
journal={Magnetic Resonance in Chemistry},
volume={57},
number={9},
pages={749--756},
year={2019},
publisher={Wiley Online Library},
doi = {10.1002/mrc.4905}
}
@article{han2015drift,
title={Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric},
author={Han, Renmin and Wang, Liansan and Xu, Fan and Zhang, Yongdeng and Zhang, Mingshu and Liu, Zhiyong and Ren, Fei and Zhang, Fa},
journal={BMC biophysics},
volume={8},
number={1},
pages={1--14},
year={2015},
publisher={Springer},
doi = {10.1186/s13628-014-0015-1}
}
@article{van2016quantitative,
title={Quantitative 3D analysis of plant roots growing in soil using magnetic resonance imaging},
author={van Dusschoten, Dagmar and Metzner, Ralf and Kochs, Johannes and Postma, Johannes A and Pflugfelder, Daniel and B{\"u}hler, Jonas and Schurr, Ulrich and Jahnke, Siegfried},
journal={Plant physiology},
volume={170},
number={3},
pages={1176--1188},
year={2016},
publisher={American Society of Plant Biologists},
doi = {10.1104/pp.15.01388}
}
@article{GRUSSU2020116884,
title = {Multi-parametric quantitative in vivo spinal cord MRI with unified signal readout and image denoising},
journal = {NeuroImage},
volume = {217},
pages = {116884},
year = {2020},
issn = {1053-8119},
doi = {10.1016/j.neuroimage.2020.116884},
url = {https://www.sciencedirect.com/science/article/pii/S1053811920303700},
author = {Francesco Grussu and Marco Battiston and Jelle Veraart and Torben Schneider and Julien Cohen-Adad and Timothy M. Shepherd and Daniel C. Alexander and Els Fieremans and Dmitry S. Novikov and Claudia A.M. {Gandini Wheeler-Kingshott}},
doi = {10.1016/j.neuroimage.2020.116884}
}
@dataset{fijirelaxDataset,
author = {Romain Fernandez and
Cedric Moisy},
title = {FijiRelax plugin test data},
month = oct,
year = 2022,
publisher = {Zenodo},
doi = {10.5281/zenodo.4518730},
url = {https://doi.org/10.5281/zenodo.4518730}
}
@inproceedings{christian2019spatially,
title={Spatially regularized multi-exponential transverse relaxation times estimation from magnitude magnetic resonance images under Rician noise},
author={Christian, EL and Moussaoui, Sa{\"\i}d and Collewet, Guylaine and Musse, Maja},
booktitle={2019 IEEE International Conference on Image Processing (ICIP)},
pages={1143--1147},
year={2019},
organization={IEEE},
doi = {10.1109/icip.2019.8804298}
}
@article{fernandez2021fijiyama,
title={Fijiyama: a registration tool for 3D multimodal time-lapse imaging},
author={Fernandez, Romain and Moisy, C{\'e}dric},
journal={Bioinformatics},
volume={37},
number={10},
pages={1482--1484},
year={2021},
publisher={Oxford Academic},
doi = {10.1093/bioinformatics/btaa846}
}
@article{gerhards1976analysis,
title={The analysis of spin-lattice relaxation time experiments},
author={Gerhards, Reinhard and Dietrich, Wolfgang},
journal={Journal of Magnetic Resonance (1969)},
volume={23},
number={1},
pages={21--29},
year={1976},
publisher={Elsevier},
doi = {10.1016/0022-2364(76)90133-5}
}
@article{karakuzu2020qmrlab,
title={qMRLab: Quantitative MRI analysis, under one umbrella},
author={Karakuzu, Agah and Boudreau, Mathieu and Duval, Tanguy and Boshkovski, Tommy and Leppert, Ilana R and Cabana, Jean-Fran{\c{c}}ois and Gagnon, Ian and Beliveau, Pascale and Pike, G Bruce and Cohen-Adad, Julien and others},
journal={Journal of Open Source Software},
volume={5},
number={53},
pages={2343},
year={2020},
doi = {10.21105/joss.02343}
}
@article{raya2010t2,
title={T2 measurement in articular cartilage: impact of the fitting method on accuracy and precision at low SNR},
author={Raya, Jos{\'e} G and Dietrich, Olaf and Horng, Annie and Weber, J{\"u}rgen and Reiser, Maximilian F and Glaser, Christian},
journal={Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine},
volume={63},
number={1},
pages={181--193},
year={2010},
publisher={Wiley Online Library},
doi = {10.1002/mrm.22178}
}
@article{musse2009monitoring,
title={Monitoring the postharvest ripening of tomato fruit using quantitative MRI and NMR relaxometry},
author={Musse, Maja and Quellec, St{\'e}phane and Cambert, Mireille and Devaux, Marie-Fran{\c{c}}oise and Lahaye, Marc and Mariette, Fran{\c{c}}ois},
journal={Postharvest Biology and Technology},
volume={53},
number={1-2},
pages={22--35},
year={2009},
publisher={Elsevier},
doi = {10.1016/j.postharvbio.2009.02.004}
}
@inproceedings{sorin2018nmr,
title={NMR study of fresh cut escarole: influence of temperature and storage time on leaf structure and water repartition},
author={Sorin, C and Musse, Maja and Mariette, M},
booktitle={14th International Conference on the Applications of Magnetic Resonance in Food Science},
year={2018},
doi = {}
}
@article{van2013mri,
title={MRI of plants and foods},
author={Van As, Henk and Van Duynhoven, John},
journal={Journal of Magnetic Resonance},
volume={229},
pages={25--34},
year={2013},
publisher={Elsevier},
doi = {10.1016/j.jmr.2012.12.019}
}