Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

What is the StitchIt_Log.txt file in the root of the analysis machine RAID array? #172

Open
raacampbell opened this issue Jul 15, 2020 · 1 comment

Comments

@raacampbell
Copy link
Contributor

$ ls -l
total 4
drwxrwxr-x 1 kiosk users 140 Jul  3 21:55 ADMIN
drwxrwx--- 1 kiosk users 124 Jul 15 21:06 CSHL018_CSHL019_DOP8_DOP9
drwxrwx--- 1 kiosk users 370 Jul 15 12:36 DOP11_CSH_ZAD_017_CSH_ZAD_021_CSH_ZAD_024
drwxrwx--- 1 kiosk users 370 Jul  9 15:04 GtvGvLG16_19
drwxrwx--- 1 kiosk users 352 Jul 15 23:30 MS_FN_1111808
drwxrwx--- 1 kiosk users 418 Jul 16 00:20 SL_1055875
drwxrwx--- 1 kiosk users 358 Jul 16 00:22 SL_1055876
drwxrwx--- 1 kiosk users 358 Jul 16 00:15 SL_1068975
drwxrwx--- 1 kiosk users 406 Jul 16 00:19 SL_1100840_1100845
drwxrwx--- 1 kiosk users 404 Jul 14 17:34 SL_1100840_1100845_old
drwxrwx--- 1 kiosk users 358 Jul 16 00:22 SL_CA517_1
-rw-rw-r-- 1 kiosk users 230 Jul 15 14:51 StitchIt_Log.txt
(base) joiner:[BakingTrayStacks]$ cat StitchIt_Log.txt 
07:33:01 08-07-2020 - 12:57:10 08-07-2020 - 02:41:46 09-07-2020 - 10:56:20 09-07-2020 - 12:11:01 10-07-2020 - 08:27:26 11-07-2020 - 09:35:33 14-07-2020 - 17:38:48 14-07-2020 - 12:06:00 15-07-2020 - 14:51:46 15-07-2020 - (base) joiner:[BakingTrayStacks]$ 
$ cat SL_CA517_1/StitchIt_Log.txt 
18:17:31 10-07-2020 - g18:17:31 10-07-2020 - Running:
rsync -a /mnt/brainsaw/SL_CA517_1/ /mnt/data/BakingTrayStacks/SL_CA517_1
18:17:39 10-07-2020 - g18:17:39 10-07-2020 - Running:
rsync -a /mnt/brainsaw/SL_CA517_1/ /mnt/data/BakingTrayStacks/SL_CA517_1
18:17:45 10-07-2020 - Running background web preview with:
 /usr/local/MATLAB/R2019b/bin/matlab -nosplash -nodesktop -r 'run("/tmp/webPreviewBootstrap_brainsaw.m")' > /tmp/webPreviewLogFile_brainsaw &
03:33:53 11-07-2020 - Running post acquisition function
08:27:25 11-07-2020 - Stitching finished!
(base) joiner:[BakingTrayStacks]$ 

I reckon the former might be the reason for the weird write error produced by syncAndCrunch when it first starts. It will be good to get rid of that, if so.

@raacampbell
Copy link
Contributor Author

Despite these recent changes: 38ac84d the file still appears.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant