NAMESPACE

# Generated by roxygen2: do not edit by hand

export(classify.cells)
export(clustcells)
export(clustcells_cytof)
export(computePCADim)
export(embedNewCells)
export(ensToSymbol)
export(findClusterMarkers)
export(gficf)
export(loadGFICF)
export(plotCells)
export(plotGSEA)
export(plotGeneViolin)
export(plotGenes)
export(plotPathway)
export(runGSEA)
export(runLSA)
export(runPCA)
export(runReduction)
export(saveGFICF)
import(Matrix)
import(fastmatch)
import(ggplot2)
import(ggrepel)
import(uwot)
importFrom(MASS,fitdistr)
importFrom(RSpectra,svds)
importFrom(RcppParallel,RcppParallelLibs)
importFrom(RcppParallel,setThreadOptions)
importFrom(Rtsne,Rtsne)
importFrom(biomaRt,getBM)
importFrom(biomaRt,getLDS)
importFrom(biomaRt,useMart)
importFrom(class,knn)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(fgsea,fgsea)
importFrom(igraph,as_adj)
importFrom(igraph,cluster_louvain)
importFrom(igraph,fastgreedy.community)
importFrom(igraph,graph.data.frame)
importFrom(igraph,membership)
importFrom(igraph,simplify)
importFrom(igraph,walktrap.community)
importFrom(leiden,leiden)
importFrom(locfit,locfit)
importFrom(locfit,locfit.robust)
importFrom(locfit,lp)
importFrom(reshape2,melt)
importFrom(reticulate,py_module_available)
importFrom(rsvd,rpca)
importFrom(rsvd,rsvd)
importFrom(utils,read.table)
importFrom(utils,write.table)
useDynLib(gficf, .registration = TRUE)