From 01a902f23f508efd8d2b2cc106eb969997153391 Mon Sep 17 00:00:00 2001 From: raim Date: Mon, 26 Aug 2024 11:33:47 -0400 Subject: [PATCH] testing git-internal links --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 98664a6..a04c8eb 100644 --- a/README.md +++ b/README.md @@ -48,10 +48,10 @@ Run a standard database search using the protein databases appended with candida A sample MaxQuant paramater file is provided in MaxQuant_templates. The output from this validation search is required to proceed with the next steps of the pipeline. ### Step 5. Quantify alterate decoding events -The code for this step can be found in decode_pipeline/python_scripts. decode_pipeline/README.md contains detailed instructions for running this code. +The code for this step can be found in decode_pipeline/python_scripts. [decode_pipeline/README.md](decode_pipeline/README.md) contains detailed instructions for running this code. ### Step 6. Downstream data analysis -The data generated in the pipeline outlined above can be further analyzed in many ways. The code for the analysis described in [LINK TO PREPRINT] is compiled in ~/decode_analysis/ and [decode_figures](decode_figures). +The data generated in the pipeline outlined above can be further analyzed in many ways. The code for the analysis described in [LINK TO PREPRINT] is compiled in [decode_analysis](decode_analysis) and [decode_figures](decode_figures). These directories contain different subsets of the analyses described in the paper along with the code to reproduce the figures. Each contain a README.md describing the analyses contained.