build-and-test.yml

#
# This source file is part of the PAWS application based on the Stanford Spezi Template Application project
#
# SPDX-FileCopyrightText: 2023 Stanford University
#
# SPDX-License-Identifier: MIT
#

name: Build and Test

on:
  pull_request:
  workflow_dispatch:
  workflow_call:

concurrency:
  group: build-${{ github.ref }}
  cancel-in-progress: true

jobs:
  reuse_action:
    name: REUSE Compliance Check
    uses: StanfordBDHG/.github/.github/workflows/reuse.yml@v2
    permissions:
      contents: read
  # swiftlint:
  #   name: SwiftLint
  #   uses: StanfordBDHG/.github/.github/workflows/swiftlint.yml@v2
  #   permissions:
  #     contents: read
  # markdownlinkcheck:
  #   name: Markdown Link Check
  #   uses: StanfordBDHG/.github/.github/workflows/markdown-link-check.yml@v2
  #   permissions:
  #     contents: read
  # codeql:
  #   name: CodeQL
  #   uses: StanfordBDHG/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2
  #   with:
  #     codeql: true
  #     fastlanelane: build
  #   permissions:
  #     security-events: write
  #     actions: read
  # buildandtest:
  #   name: Build and Test
  #   uses: StanfordBDHG/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2
  #   permissions:
  #     contents: read
  #   with:
  #     artifactname: PAWS.xcresult
  #     runsonlabels: '["macOS", "self-hosted"]'
  #     setupfirebaseemulator: true
  #     fastlanelane: test
  #     firebaseemulatorimport: ./firebase
  #   secrets:
  #     GOOGLE_APPLICATION_CREDENTIALS_BASE64: ${{ secrets.GOOGLE_APPLICATION_CREDENTIALS_BASE64 }}
  # uploadcoveragereport:
  #   name: Upload Coverage Report
  #   needs: buildandtest
  #   uses: StanfordBDHG/.github/.github/workflows/create-and-upload-coverage-report.yml@v2
  #   permissions:
  #     contents: read
  #   with:
  #     coveragereports: PAWS.xcresult
  #   secrets:
  #     token: ${{ secrets.CODECOV_TOKEN }}
  # pylint:
  #   name: PyLint
  #   runs-on: ubuntu-latest
  #   strategy:
  #     matrix:
  #       python-version: ["3.8", "3.9", "3.10"]
  #   steps:
  #     - uses: actions/checkout@v4
  #     - uses: actions/setup-python@v5
  #     - name: Install Infrastructure
  #       run: |
  #         pip install pylint
  #     - name: Install ECGReviewer Dependencies
  #       run: |
  #         pip install -r ./ecg_data_manager/requirements.txt
  #     - name: Analysing the code with pylint
  #       run: |
  #         pylint $(git ls-files '*.py')
  # black_lint:
  #   name: Black Code Formatter Check
  #   runs-on: ubuntu-latest
  #   steps:
  #     - uses: actions/checkout@v4
  #     - uses: actions/setup-python@v5
  #     - name: Install Black
  #       run: pip install black[jupyter]
  #     - name: Check code formatting with Black
  #       run: black . --exclude '\.ipynb$'
  # buildandtestdatapipelinenotebook:
  #   name: Build and Test ECG Reviewer Notebook
  #   runs-on: ubuntu-latest
  #   steps:
  #   - uses: actions/checkout@v4
  #   - name: Set up Python
  #     uses: actions/setup-python@v5
  #   - name: Setup NodeJS
  #     uses: actions/setup-node@v3
  #     with:
  #       node-version: '22'
  #   - name: Setup Java
  #     uses: actions/setup-java@v3
  #     with:
  #       distribution: 'microsoft'
  #       java-version: '17'
  #   - name: Setup LaTex
  #     run: |
  #       sudo apt-get update -y
  #       sudo apt-get install -y --no-install-recommends pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic || true
  #       if ! dpkg -l pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic; then
  #         sudo apt-get update --fix-missing
  #         sudo apt-get install -y pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic
  #       fi
  #   - name: Cache Firebase Emulators
  #     uses: actions/cache@v3
  #     with:
  #       path: ~/.cache/firebase/emulators
  #       key: ${{ runner.os }}-${{ runner.arch }}-firebase-emulators-${{ hashFiles('~/.cache/firebase/emulators/**') }}
  #   - name: Install Firebase CLI Tools
  #     run: npm install -g firebase-tools
  #   - name: Install Infrastructure
  #     run: |
  #       python -m pip install --upgrade pip
  #       pip install jupyterlab
  #   - name: Install ECGReviewer Dependencies
  #     run: |
  #       pip install -r ./ecg_data_manager/requirements.txt
  #   - name: Install Cloud Functions Dependencies
  #     run: |
  #       npm install --prefix functions
  #   - name: Set Firestore Emulator Environment Variable
  #     run: |
  #       echo "FIRESTORE_EMULATOR_HOST=localhost:8080" >> $GITHUB_ENV
  #       echo "GCLOUD_PROJECT=ecg_example_project" >> $GITHUB_ENV
  #   - name: Run Firebase Emulator & Execute Notebook
  #     run: |
  #       firebase emulators:exec --import=./ecg_data_manager/sample_data "jupyter nbconvert --to pdf --execute './ecg_data_manager/ECG Reviewer.ipynb'"
  #     env:
  #       CI: true
  #   - uses: actions/upload-artifact@v4
  #     with:
  #       name: ECGReviewer_ColabBasic.pdf
  #       path: ECGReviewer_ColabBasic.pdf