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Im pretty sure I know what's going on here. I've actually got a pretty big PR I'm working on that should fix this and several other bugs. I'm trying to move more stuff to ArrayInterface so that we have more generic support throughout the Julia ecosystem for some unique traits this package needs. I'll try to start moving stuff to master as it looks usable, but it will probably be a week or so before it's ready for another official release.
[caveat: I'm on a dev'd AxisIndices v0.6.3, where I made a change to fix the logical indexing bug]
When you print
A = NamedAxisArray{(:a, :b, :c, :d)}(rand(5,4,3,2), 1:5, 1:4, 1:3, 1:2)
you get entries of the form:where I would expect entries of the form
[a, b, c[3], d[2]] = ...
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