diff --git a/docs/make.bat b/docs/make.bat
index 925c36b9..20c9af70 100644
--- a/docs/make.bat
+++ b/docs/make.bat
@@ -1,40 +1,40 @@
-@ECHO OFF
-
-PUSHD %~dp0
-
-IF "%SPHINX_BUILD%" == "" (
- SET SPHINX_BUILD=sphinx-build.exe
-)
-
-%SPHINX_BUILD% >NUL 2>NUL
-
-IF ERRORLEVEL 9009 (
- ECHO.
- ECHO.Sphinx not found, install it from:
- ECHO.http://sphinx-doc.org/
- ECHO.
-
- EXIT /B 1
-)
-
-SET SPHINX_TYPE=%1
-
-IF "%SPHINX_TYPE%" == "" (
- ECHO.
- %SPHINX_BUILD% --help
- ECHO.
-
- EXIT /B 1
-)
-
-SET SOURCE_DIR=source
-SET BUILD_DIR=build
-FOR /F "TOKENS=1,* DELIMS= " %%A IN ("%*") DO SET SPHINX_OPTS=%%B
-
-DEL /S /Q %BUILD_DIR%\%SPHINX_TYPE%\* >NUL 2>NUL
-
-ECHO.
-%SPHINX_BUILD% -b %SPHINX_TYPE% %SPHINX_OPTS% %SOURCE_DIR% %BUILD_DIR%\%SPHINX_TYPE%
-ECHO.
-
+@ECHO OFF
+
+PUSHD %~dp0
+
+IF "%SPHINX_BUILD%" == "" (
+ SET SPHINX_BUILD=sphinx-build.exe
+)
+
+%SPHINX_BUILD% >NUL 2>NUL
+
+IF ERRORLEVEL 9009 (
+ ECHO.
+ ECHO.Sphinx not found, install it from:
+ ECHO.http://sphinx-doc.org/
+ ECHO.
+
+ EXIT /B 1
+)
+
+SET SPHINX_TYPE=%1
+
+IF "%SPHINX_TYPE%" == "" (
+ ECHO.
+ %SPHINX_BUILD% --help
+ ECHO.
+
+ EXIT /B 1
+)
+
+SET SOURCE_DIR=source
+SET BUILD_DIR=build
+FOR /F "TOKENS=1,* DELIMS= " %%A IN ("%*") DO SET SPHINX_OPTS=%%B
+
+DEL /S /Q %BUILD_DIR%\%SPHINX_TYPE%\* >NUL 2>NUL
+
+ECHO.
+%SPHINX_BUILD% -b %SPHINX_TYPE% %SPHINX_OPTS% %SOURCE_DIR% %BUILD_DIR%\%SPHINX_TYPE%
+ECHO.
+
POPD
\ No newline at end of file
diff --git a/meta.yaml b/meta.yaml
index cd9229d3..b32399ba 100644
--- a/meta.yaml
+++ b/meta.yaml
@@ -1,57 +1,57 @@
-{% set data = load_setup_py_data(from_recipe_dir=True) %}
-{% set name = data['name'] %}
-{% set version = data['version'] %}
-{% set summary = data['description'] %}
-{% set description = data['long_description'][:data['long_description'].index('
')].strip() %}
-
-package:
- name: {{ name.lower() }}
- version: {{ version }}
-
-source:
- url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
- sha256: 679887fc30d0331457c275ebd46d2bdd9f87424c33dddf4a467046d64c1aeef7
-
-build:
- number: 0
- noarch: python
- script: {{ PYTHON }} -m pip install . -vv
-
-requirements:
- host:
- - python {{ data['python_requires'] }}
- - pip
- - setuptools
- run:
- - python {{ data['python_requires'] }}
-{% for dep in data['install_requires'] %}
-{% if dep.lower().startswith('matplotlib') %}
- - matplotlib-base
-{% else %}
- - {{ dep.lower() }}
-{% endif %}
-{% endfor %}
-
-test:
- imports:
- - {{ name.lower() }}
- source_files:
- - tests/
- requires:
- - pytest
- commands:
- - pytest tests/
-
-about:
- home: {{ data['url'] }}
- license: {{ data['license'] }}
- license_file: {{ data['license_files'][0] }}
- summary: {{ summary }}
- description: {{ description }}
- doc_url: https://{{ name.lower() }}.readthedocs.io/
- doc_source_url: {{ data['url'] }}/blob/master/docs/source/index.rst
- dev_url: {{ data['url'] }}
-
-extra:
- maintainers:
- - TommasoBelluzzo
+{% set data = load_setup_py_data(from_recipe_dir=True) %}
+{% set name = data['name'] %}
+{% set version = data['version'] %}
+{% set summary = data['description'] %}
+{% set description = data['long_description'][:data['long_description'].index('')].strip() %}
+
+package:
+ name: {{ name.lower() }}
+ version: {{ version }}
+
+source:
+ url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+ sha256: 62429ecad5d324d25bd650f945ea8f1af1224adec6b0967021072f8b11275434
+
+build:
+ number: 0
+ noarch: python
+ script: {{ PYTHON }} -m pip install . -vv
+
+requirements:
+ host:
+ - python {{ data['python_requires'] }}
+ - pip
+ - setuptools
+ run:
+ - python {{ data['python_requires'] }}
+{% for dep in data['install_requires'] %}
+{% if dep.lower().startswith('matplotlib') %}
+ - matplotlib-base
+{% else %}
+ - {{ dep.lower() }}
+{% endif %}
+{% endfor %}
+
+test:
+ imports:
+ - {{ name.lower() }}
+ source_files:
+ - tests/
+ requires:
+ - pytest
+ commands:
+ - pytest tests/
+
+about:
+ home: {{ data['url'] }}
+ license: {{ data['license'] }}
+ license_file: {{ data['license_files'][0] }}
+ summary: {{ summary }}
+ description: {{ description }}
+ doc_url: https://{{ name.lower() }}.readthedocs.io/
+ doc_source_url: {{ data['url'] }}/blob/master/docs/source/index.rst
+ dev_url: {{ data['url'] }}
+
+extra:
+ maintainers:
+ - TommasoBelluzzo
diff --git a/pydtmc/__init__.py b/pydtmc/__init__.py
index 1191b7f2..893f8514 100644
--- a/pydtmc/__init__.py
+++ b/pydtmc/__init__.py
@@ -1,7 +1,7 @@
# -*- coding: utf-8 -*-
__title__ = 'PyDTMC'
-__version__ = '8.6.0'
+__version__ = '8.7.0'
__author__ = 'Tommaso Belluzzo'
__all__ = [
diff --git a/tests/fixtures/fixtures_aliases.json b/tests/fixtures/fixtures_aliases.json
index b45a6caf..c4b776a6 100644
--- a/tests/fixtures/fixtures_aliases.json
+++ b/tests/fixtures/fixtures_aliases.json
@@ -1,96 +1,96 @@
-{
- "aliased_methods_data": [
- {
- "p": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]],
- "params": {
- "committor_probabilities": ["backward", 0, 1],
- "conditional_probabilities": [1],
- "expected_rewards": [4, [-2.0, -0.7, -8.0]],
- "expected_transitions": [6, null],
- "first_passage_probabilities": [3, 1, null],
- "first_passage_reward": [21, 1, 0, [-4.4, 7.5, 4.8]],
- "hitting_probabilities": [null],
- "hitting_times": [null],
- "mean_absorption_times": null,
- "mean_first_passage_times_between": [0, 2],
- "mean_first_passage_times_to": null,
- "mean_number_visits": null,
- "mean_recurrence_times": null,
- "mixing_time": [null, 3, "natural"],
- "next_state": [1, false, 7331],
- "time_correlations": [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], null, [1, 10, 100]],
- "time_relaxations": [[0, 1, 1, 1, 1, 0], null, [1, 10, 100]],
- "to_bounded_chain": ["absorbing"],
- "to_canonical_form": null,
- "to_lazy_chain": [0.6],
- "to_nth_order": [3],
- "to_subchain": [[1, 2]]
- }
- },
- {
- "p": [[0.70, 0.15, 0.15], [0.15, 0.70, 0.15], [0.15, 0.15, 0.70]],
- "params": {
- "committor_probabilities": ["backward", 0, 2],
- "conditional_probabilities": [0],
- "expected_rewards": [12, [1.4, 0.0, -6.1]],
- "expected_transitions": [32, [0.1, 0.45, 0.45]],
- "first_passage_probabilities": [7, 0, [1, 2]],
- "first_passage_reward": [18, 1, 2, [-1.9, 8.9, 0.0]],
- "hitting_probabilities": [null],
- "hitting_times": [null],
- "mean_absorption_times": null,
- "mean_first_passage_times_between": [0, 1],
- "mean_first_passage_times_to": null,
- "mean_number_visits": null,
- "mean_recurrence_times": null,
- "mixing_time": [null, 12, "traditional"],
- "next_state": [1, false, 7331],
- "time_correlations": [[0, 0, 0, 1, 2, 2, 2, 2, 2], null, 50],
- "time_relaxations": [[0, 1, 1, 1, 1, 0], null, 50],
- "to_bounded_chain": ["reflecting"],
- "to_canonical_form": null,
- "to_lazy_chain": [[0.1, 0.2, 0.1]],
- "to_nth_order": [6],
- "to_subchain": [[0, 2]]
- }
- } ,
- {
- "p": [[0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.1, 0.8, 0.0, 0.1, 0.0, 0.0], [0.3, 0.0, 0.3, 0.2, 0.2, 0.0], [0.5, 0.0, 0.0, 0.0, 0.0, 0.5], [0.2, 0.2, 0.2, 0.0, 0.2, 0.2], [0.0, 0.0, 0.0, 0.0, 0.0, 1.0]],
- "params": {
- "committor_probabilities": ["forward", 3, 5],
- "conditional_probabilities": [4],
- "expected_rewards": [1, [-0.4, 0.0, -3.9, 2.1, 3.6, 0.0]],
- "expected_transitions": [9, null],
- "first_passage_probabilities": [3, 0, [1, 2, 5]],
- "first_passage_reward": [12, 0, [1, 4], [2.3, 3.2, 0.0, 2.1, 5.5, -9.2]],
- "hitting_probabilities": [[2, 3]],
- "hitting_times": [[0, 1, 2]],
- "mean_absorption_times": null,
- "mean_first_passage_times_between": [[0, 2], [1, 3]],
- "mean_first_passage_times_to": [[0, 3, 4]],
- "mean_number_visits": null,
- "mean_recurrence_times": null,
- "next_state": [1, false, 7331],
- "mixing_time": [[0.4, 0.0, 0.2, 0.2, 0.2, 0.0], 5, "natural"],
- "time_correlations": [[0, 1, 1, 1, 1, 0], [2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1], [0, 1, 2, 3, 4, 5]],
- "time_relaxations": [[0, 1, 1, 1, 1, 0], [0.0, 0.0, 0.8, 0.0, 0.0, 0.2], [0, 1, 2, 3, 4, 5]],
- "to_bounded_chain": [0.75],
- "to_canonical_form": null,
- "to_lazy_chain": [0.1],
- "to_nth_order": [2],
- "to_subchain": [[1, 2, 3]]
- }
- }
- ],
- "aliased_properties_data": [
- {
- "p": [[1.0, 0.0], [0.0, 1.0]]
- },
- {
- "p": [[0.0, 0.0, 1.0], [0.15, 0.70, 0.15], [0.0, 0.0, 1.0]]
- } ,
- {
- "p": [[0.3, 0.4, 0.3], [0.6, 0.2, 0.2], [0.2, 0.7, 0.1]]
- }
- ]
+{
+ "aliased_methods_data": [
+ {
+ "p": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]],
+ "params": {
+ "committor_probabilities": ["backward", 0, 1],
+ "conditional_probabilities": [1],
+ "expected_rewards": [4, [-2.0, -0.7, -8.0]],
+ "expected_transitions": [6, null],
+ "first_passage_probabilities": [3, 1, null],
+ "first_passage_reward": [21, 1, 0, [-4.4, 7.5, 4.8]],
+ "hitting_probabilities": [null],
+ "hitting_times": [null],
+ "mean_absorption_times": null,
+ "mean_first_passage_times_between": [0, 2],
+ "mean_first_passage_times_to": null,
+ "mean_number_visits": null,
+ "mean_recurrence_times": null,
+ "mixing_time": [null, 3, "natural"],
+ "next_state": [1, false, 7331],
+ "time_correlations": [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], null, [1, 10, 100]],
+ "time_relaxations": [[0, 1, 1, 1, 1, 0], null, [1, 10, 100]],
+ "to_bounded_chain": ["absorbing"],
+ "to_canonical_form": null,
+ "to_lazy_chain": [0.6],
+ "to_nth_order": [3],
+ "to_subchain": [[1, 2]]
+ }
+ },
+ {
+ "p": [[0.70, 0.15, 0.15], [0.15, 0.70, 0.15], [0.15, 0.15, 0.70]],
+ "params": {
+ "committor_probabilities": ["backward", 0, 2],
+ "conditional_probabilities": [0],
+ "expected_rewards": [12, [1.4, 0.0, -6.1]],
+ "expected_transitions": [32, [0.1, 0.45, 0.45]],
+ "first_passage_probabilities": [7, 0, [1, 2]],
+ "first_passage_reward": [18, 1, 2, [-1.9, 8.9, 0.0]],
+ "hitting_probabilities": [null],
+ "hitting_times": [null],
+ "mean_absorption_times": null,
+ "mean_first_passage_times_between": [0, 1],
+ "mean_first_passage_times_to": null,
+ "mean_number_visits": null,
+ "mean_recurrence_times": null,
+ "mixing_time": [null, 12, "traditional"],
+ "next_state": [1, false, 7331],
+ "time_correlations": [[0, 0, 0, 1, 2, 2, 2, 2, 2], null, 50],
+ "time_relaxations": [[0, 1, 1, 1, 1, 0], null, 50],
+ "to_bounded_chain": ["reflecting"],
+ "to_canonical_form": null,
+ "to_lazy_chain": [[0.1, 0.2, 0.1]],
+ "to_nth_order": [6],
+ "to_subchain": [[0, 2]]
+ }
+ } ,
+ {
+ "p": [[0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.1, 0.8, 0.0, 0.1, 0.0, 0.0], [0.3, 0.0, 0.3, 0.2, 0.2, 0.0], [0.5, 0.0, 0.0, 0.0, 0.0, 0.5], [0.2, 0.2, 0.2, 0.0, 0.2, 0.2], [0.0, 0.0, 0.0, 0.0, 0.0, 1.0]],
+ "params": {
+ "committor_probabilities": ["forward", 3, 5],
+ "conditional_probabilities": [4],
+ "expected_rewards": [1, [-0.4, 0.0, -3.9, 2.1, 3.6, 0.0]],
+ "expected_transitions": [9, null],
+ "first_passage_probabilities": [3, 0, [1, 2, 5]],
+ "first_passage_reward": [12, 0, [1, 4], [2.3, 3.2, 0.0, 2.1, 5.5, -9.2]],
+ "hitting_probabilities": [[2, 3]],
+ "hitting_times": [[0, 1, 2]],
+ "mean_absorption_times": null,
+ "mean_first_passage_times_between": [[0, 2], [1, 3]],
+ "mean_first_passage_times_to": [[0, 3, 4]],
+ "mean_number_visits": null,
+ "mean_recurrence_times": null,
+ "next_state": [1, false, 7331],
+ "mixing_time": [[0.4, 0.0, 0.2, 0.2, 0.2, 0.0], 5, "natural"],
+ "time_correlations": [[0, 1, 1, 1, 1, 0], [2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1], [0, 1, 2, 3, 4, 5]],
+ "time_relaxations": [[0, 1, 1, 1, 1, 0], [0.0, 0.0, 0.8, 0.0, 0.0, 0.2], [0, 1, 2, 3, 4, 5]],
+ "to_bounded_chain": [0.75],
+ "to_canonical_form": null,
+ "to_lazy_chain": [0.1],
+ "to_nth_order": [2],
+ "to_subchain": [[1, 2, 3]]
+ }
+ }
+ ],
+ "aliased_properties_data": [
+ {
+ "p": [[1.0, 0.0], [0.0, 1.0]]
+ },
+ {
+ "p": [[0.0, 0.0, 1.0], [0.15, 0.70, 0.15], [0.0, 0.0, 1.0]]
+ } ,
+ {
+ "p": [[0.3, 0.4, 0.3], [0.6, 0.2, 0.2], [0.2, 0.7, 0.1]]
+ }
+ ]
}
\ No newline at end of file
diff --git a/tests/fixtures/fixtures_classification.json b/tests/fixtures/fixtures_classification.json
index be3723f4..6bf1679f 100644
--- a/tests/fixtures/fixtures_classification.json
+++ b/tests/fixtures/fixtures_classification.json
@@ -1,92 +1,92 @@
-[
- {
- "id": "#1",
- "p": [[1.0, 0.0], [0.0, 1.0]],
- "recurrent_classes": [["1"], ["2"]],
- "transient_classes": [],
- "communicating_classes": [["1"], ["2"]],
- "cyclic_classes": [],
- "absorbing_states": ["1", "2"]
- },
- {
- "id": "#2",
- "p": [[0.05, 0.95], [0.8, 0.2]],
- "recurrent_classes": [["1", "2"]],
- "transient_classes": [],
- "communicating_classes": [["1", "2"]],
- "cyclic_classes": [["1", "2"]],
- "absorbing_states": []
- },
- {
- "id": "#3",
- "p": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]],
- "recurrent_classes": [["1"], ["2"], ["3"]],
- "transient_classes": [],
- "communicating_classes": [["1"], ["2"], ["3"]],
- "cyclic_classes": [],
- "absorbing_states": ["1", "2", "3"]
- },
- {
- "id": "#4",
- "p": [[0.4, 0.3, 0.3], [0.0, 1.0, 0.0], [0.5, 0.0, 0.5]],
- "recurrent_classes": [["2"]],
- "transient_classes": [["1", "3"]],
- "communicating_classes": [["1", "3"], ["2"]],
- "cyclic_classes": [],
- "absorbing_states": ["2"]
- },
- {
- "id": "#5",
- "p": [[0.05, 0.85, 0.10], [0.1, 0.8, 0.1], [0.3, 0.4, 0.3]],
- "recurrent_classes": [["1", "2", "3"]],
- "transient_classes": [],
- "communicating_classes": [["1", "2", "3"]],
- "cyclic_classes": [["1", "2", "3"]],
- "absorbing_states": []
- },
- {
- "id": "#6",
- "p": [[0.0, 0.0, 0.5, 0.5], [1.0, 0.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0]],
- "recurrent_classes": [["1", "2", "3", "4"]],
- "transient_classes": [],
- "communicating_classes": [["1", "2", "3", "4"]],
- "cyclic_classes": [["3", "4"], ["1"], ["2"]],
- "absorbing_states": []
- },
- {
- "id": "#7",
- "p": [[0.1, 0.9, 0.0, 0.0], [0.2, 0.0, 0.8, 0.0], [0.3, 0.0, 0.0, 0.7], [0.4, 0.0, 0.0, 0.6]],
- "recurrent_classes": [["1", "2", "3", "4"]],
- "transient_classes": [],
- "communicating_classes": [["1", "2", "3", "4"]],
- "cyclic_classes": [["1", "2", "3", "4"]],
- "absorbing_states": []
- },
- {
- "id": "#8",
- "p": [[0.5, 0.5, 0.0, 0.0, 0.0], [0.5, 0.5, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.5, 0.5, 0.0], [1.0, 0.0, 0.0, 0.0, 0.0]],
- "recurrent_classes": [["1", "2"], ["3"]],
- "transient_classes": [["4"], ["5"]],
- "communicating_classes": [["1", "2"], ["3"], ["4"], ["5"]],
- "cyclic_classes": [],
- "absorbing_states": ["3"]
- },
- {
- "id": "#9",
- "p": [[0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.25, 0.75, 0.00, 0.00, 0.00, 0.00], [0.2, 0.0, 0.4, 0.2, 0.2, 0.0], [0.0, 0.0, 0.0, 0.4, 0.6, 0.0], [0.0, 0.0, 0.0, 0.5, 0.0, 0.5], [0.0, 0.0, 0.0, 0.4, 0.0, 0.6]],
- "recurrent_classes": [["4", "5", "6"], ["1", "2"]],
- "transient_classes": [["3"]],
- "communicating_classes": [["4", "5", "6"], ["1", "2"], ["3"]],
- "cyclic_classes": [],
- "absorbing_states": []
- },
- {
- "id": "#10",
- "p": [[0.0, 0.4, 0.0, 0.6, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 0.5, 0.5, 0.0]],
- "recurrent_classes": [["4", "5", "6"], ["2", "3"]],
- "transient_classes": [["1"]],
- "communicating_classes": [["4", "5", "6"], ["2", "3"], ["1"]],
- "cyclic_classes": [],
- "absorbing_states": []
- }
+[
+ {
+ "id": "#1",
+ "p": [[1.0, 0.0], [0.0, 1.0]],
+ "recurrent_classes": [["1"], ["2"]],
+ "transient_classes": [],
+ "communicating_classes": [["1"], ["2"]],
+ "cyclic_classes": [],
+ "absorbing_states": ["1", "2"]
+ },
+ {
+ "id": "#2",
+ "p": [[0.05, 0.95], [0.8, 0.2]],
+ "recurrent_classes": [["1", "2"]],
+ "transient_classes": [],
+ "communicating_classes": [["1", "2"]],
+ "cyclic_classes": [["1", "2"]],
+ "absorbing_states": []
+ },
+ {
+ "id": "#3",
+ "p": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]],
+ "recurrent_classes": [["1"], ["2"], ["3"]],
+ "transient_classes": [],
+ "communicating_classes": [["1"], ["2"], ["3"]],
+ "cyclic_classes": [],
+ "absorbing_states": ["1", "2", "3"]
+ },
+ {
+ "id": "#4",
+ "p": [[0.4, 0.3, 0.3], [0.0, 1.0, 0.0], [0.5, 0.0, 0.5]],
+ "recurrent_classes": [["2"]],
+ "transient_classes": [["1", "3"]],
+ "communicating_classes": [["1", "3"], ["2"]],
+ "cyclic_classes": [],
+ "absorbing_states": ["2"]
+ },
+ {
+ "id": "#5",
+ "p": [[0.05, 0.85, 0.10], [0.1, 0.8, 0.1], [0.3, 0.4, 0.3]],
+ "recurrent_classes": [["1", "2", "3"]],
+ "transient_classes": [],
+ "communicating_classes": [["1", "2", "3"]],
+ "cyclic_classes": [["1", "2", "3"]],
+ "absorbing_states": []
+ },
+ {
+ "id": "#6",
+ "p": [[0.0, 0.0, 0.5, 0.5], [1.0, 0.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0]],
+ "recurrent_classes": [["1", "2", "3", "4"]],
+ "transient_classes": [],
+ "communicating_classes": [["1", "2", "3", "4"]],
+ "cyclic_classes": [["3", "4"], ["1"], ["2"]],
+ "absorbing_states": []
+ },
+ {
+ "id": "#7",
+ "p": [[0.1, 0.9, 0.0, 0.0], [0.2, 0.0, 0.8, 0.0], [0.3, 0.0, 0.0, 0.7], [0.4, 0.0, 0.0, 0.6]],
+ "recurrent_classes": [["1", "2", "3", "4"]],
+ "transient_classes": [],
+ "communicating_classes": [["1", "2", "3", "4"]],
+ "cyclic_classes": [["1", "2", "3", "4"]],
+ "absorbing_states": []
+ },
+ {
+ "id": "#8",
+ "p": [[0.5, 0.5, 0.0, 0.0, 0.0], [0.5, 0.5, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.5, 0.5, 0.0], [1.0, 0.0, 0.0, 0.0, 0.0]],
+ "recurrent_classes": [["1", "2"], ["3"]],
+ "transient_classes": [["4"], ["5"]],
+ "communicating_classes": [["1", "2"], ["3"], ["4"], ["5"]],
+ "cyclic_classes": [],
+ "absorbing_states": ["3"]
+ },
+ {
+ "id": "#9",
+ "p": [[0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.25, 0.75, 0.00, 0.00, 0.00, 0.00], [0.2, 0.0, 0.4, 0.2, 0.2, 0.0], [0.0, 0.0, 0.0, 0.4, 0.6, 0.0], [0.0, 0.0, 0.0, 0.5, 0.0, 0.5], [0.0, 0.0, 0.0, 0.4, 0.0, 0.6]],
+ "recurrent_classes": [["4", "5", "6"], ["1", "2"]],
+ "transient_classes": [["3"]],
+ "communicating_classes": [["4", "5", "6"], ["1", "2"], ["3"]],
+ "cyclic_classes": [],
+ "absorbing_states": []
+ },
+ {
+ "id": "#10",
+ "p": [[0.0, 0.4, 0.0, 0.6, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 0.5, 0.5, 0.0]],
+ "recurrent_classes": [["4", "5", "6"], ["2", "3"]],
+ "transient_classes": [["1"]],
+ "communicating_classes": [["4", "5", "6"], ["2", "3"], ["1"]],
+ "cyclic_classes": [],
+ "absorbing_states": []
+ }
]
\ No newline at end of file
diff --git a/tests/fixtures/fixtures_conversions.json b/tests/fixtures/fixtures_conversions.json
index f73d72ca..f61154bf 100644
--- a/tests/fixtures/fixtures_conversions.json
+++ b/tests/fixtures/fixtures_conversions.json
@@ -1,42 +1,42 @@
-{
- "dictionary_data": {
- "seed": 7331,
- "runs": 100,
- "maximum_size": 30
- },
- "graph_data": {
- "seed": 7331,
- "runs": 50,
- "maximum_size": 10
- },
- "file_data": [
- {
- "id": "csv",
- "seed": 7331,
- "runs": 50,
- "maximum_size": 20,
- "file_extension": ".csv"
- },
- {
- "id": "json",
- "seed": 7331,
- "runs": 50,
- "maximum_size": 20,
- "file_extension": ".json"
- },
- {
- "id": "txt",
- "seed": 7331,
- "runs": 50,
- "maximum_size": 20,
- "file_extension": ".txt"
- },
- {
- "id": "xml",
- "seed": 7331,
- "runs": 50,
- "maximum_size": 20,
- "file_extension": ".xml"
- }
- ]
+{
+ "dictionary_data": {
+ "seed": 7331,
+ "runs": 100,
+ "maximum_size": 30
+ },
+ "graph_data": {
+ "seed": 7331,
+ "runs": 50,
+ "maximum_size": 10
+ },
+ "file_data": [
+ {
+ "id": "csv",
+ "seed": 7331,
+ "runs": 50,
+ "maximum_size": 20,
+ "file_extension": ".csv"
+ },
+ {
+ "id": "json",
+ "seed": 7331,
+ "runs": 50,
+ "maximum_size": 20,
+ "file_extension": ".json"
+ },
+ {
+ "id": "txt",
+ "seed": 7331,
+ "runs": 50,
+ "maximum_size": 20,
+ "file_extension": ".txt"
+ },
+ {
+ "id": "xml",
+ "seed": 7331,
+ "runs": 50,
+ "maximum_size": 20,
+ "file_extension": ".xml"
+ }
+ ]
}
\ No newline at end of file
diff --git a/tests/fixtures/fixtures_fitting.json b/tests/fixtures/fixtures_fitting.json
index c4e80f59..f462fc8d 100644
--- a/tests/fixtures/fixtures_fitting.json
+++ b/tests/fixtures/fixtures_fitting.json
@@ -1,160 +1,160 @@
-{
- "fit_function_data": [
- {
- "possible_states": ["A", "B", "C"],
- "f": "(x_value + y_value)**2.0",
- "quadrature_type": "gauss-chebyshev",
- "quadrature_interval": null,
- "value": [[0.00985334, 0.44118948, 0.54895719], [0.06594351, 0.51282051, 0.42123598], [0.10399481, 0.53388997, 0.36211522]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "f": "1.0 if x_index == y_index else 0.0",
- "quadrature_type": "gauss-legendre",
- "quadrature_interval": null,
- "value": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "f": "1.0 + (x_value * y_value)",
- "quadrature_type": "gauss-legendre",
- "quadrature_interval": [5.0, 10.0],
- "value": [[0.20773400, 0.44444400, 0.34782100], [0.20730900, 0.44444400, 0.34824700], [0.20705500, 0.44444400, 0.34850000]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "f": "3.0",
- "quadrature_type": "niederreiter",
- "quadrature_interval": null,
- "value": [[0.25, 0.25, 0.25, 0.25], [0.25, 0.25, 0.25, 0.25], [0.25, 0.25, 0.25, 0.25], [0.25, 0.25, 0.25, 0.25]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "f": "(x_value * 1.5) + y_value",
- "quadrature_type": "niederreiter",
- "quadrature_interval": [0.0, 2.0],
- "value": [[0.22378200, 0.31329500, 0.18670500, 0.27621800], [0.23294300, 0.29117900, 0.20882100, 0.26705700], [0.21628100, 0.33140500, 0.16859500, 0.28371900], [0.23005700, 0.29814700, 0.20185300, 0.26994300]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "f": "x_value**y_value",
- "quadrature_type": "newton-cotes",
- "quadrature_interval": null,
- "value": [[0.53961500, 0.29696100, 0.16342400], [0.41259900, 0.32748000, 0.25992100], [0.35378400, 0.33292300, 0.31329300]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "f": "x_value**y_value",
- "quadrature_type": "newton-cotes",
- "quadrature_interval": [0.0, 2.0],
- "value": [[0.58415600, 0.28083300, 0.13501000], [0.33333333, 0.33333333, 0.33333333], [0.22821800, 0.32081100, 0.45097100]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "f": "(x_value + y_value) * 1.75",
- "quadrature_type": "simpson-rule",
- "quadrature_interval": [0.0, 2.0],
- "value": [[0.00000000, 0.66666667, 0.33333333], [0.08333333, 0.66666667, 0.25000000], [0.11111111, 0.66666667, 0.22222222]]
- },
- {
- "possible_states": ["A", "B"],
- "f": "x_value**0.5",
- "quadrature_type": "trapezoid-rule",
- "quadrature_interval": null,
- "value": [[0.5, 0.5], [0.5, 0.5]]
- },
- {
- "possible_states": ["A", "B"],
- "f": "(x_value + y_value) * 0.99",
- "quadrature_type": "trapezoid-rule",
- "quadrature_interval": null,
- "value": [[0.00000000, 1.00000000], [0.33333333, 0.66666667]]
- }
- ],
- "fit_sequence_data": [
- {
- "possible_states": ["A", "B", "C"],
- "sequence": ["A", "A", "C", "A", "C", "C", "B", "C", "A", "C", "C"],
- "fitting_type": "map",
- "fitting_param": null,
- "value": [[0.25, 0.00, 0.75], [0.00, 0.00, 1.00], [0.40, 0.20, 0.40]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "sequence": ["A", "A", "C", "A", "C", "C", "B", "C", "A", "C", "C"],
- "fitting_type": "mle",
- "fitting_param": null,
- "value": [[0.25, 0.00, 0.75], [0.00, 0.00, 1.00], [0.40, 0.20, 0.40]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B", "A", "A"],
- "fitting_type": "map",
- "fitting_param": null,
- "value": [[0.50000000, 0.50000000, 0.00000000], [0.33333333, 0.00000000, 0.66666667], [0.20000000, 0.20000000, 0.60000000]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B", "A", "A"],
- "fitting_type": "mle",
- "fitting_param": null,
- "value": [[0.50000000, 0.50000000, 0.00000000], [0.33333333, 0.00000000, 0.66666667], [0.20000000, 0.20000000, 0.60000000]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B"],
- "fitting_type": "map",
- "fitting_param": [[7, 15, 9], [1, 7, 7], [9, 1, 2]],
- "value": [[0.22580600, 0.51612900, 0.25806500], [0.00000000, 0.42857100, 0.57142900], [0.64285700, 0.07142900, 0.28571400]]
- },
- {
- "possible_states": ["A", "B", "C"],
- "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B", "A", "A"],
- "fitting_type": "mle",
- "fitting_param": true,
- "value": [[0.49987509, 0.49987509, 0.00024981], [0.33333333, 0.00033300, 0.66633367], [0.20007995, 0.20007995, 0.59984010]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "A"],
- "fitting_type": "map",
- "fitting_param": null,
- "value": [[0.33333333, 0.33333333, 0.33333333, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.25000000, 0.25000000, 0.25000000, 0.25000000]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "A"],
- "fitting_type": "mle",
- "fitting_param": null,
- "value": [[0.33333333, 0.33333333, 0.33333333, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.25000000, 0.25000000, 0.25000000, 0.25000000]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "A"],
- "fitting_type": "map",
- "fitting_param": [[3, 5, 3, 5], [5, 3, 5, 3], [8, 1, 17, 3], [4, 9, 1, 1]],
- "value": [[0.22222222, 0.33333333, 0.22222222, 0.22222222], [0.35714300, 0.14285700, 0.35714300, 0.14285700], [0.32258100, 0.00000000, 0.61290300, 0.06451600], [0.27272700, 0.72727300, 0.00000000, 0.00000000]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "A"],
- "fitting_type": "mle",
- "fitting_param": true,
- "value": [[0.33327781, 0.33327781, 0.33327781, 0.00016656], [0.49950100, 0.00049900, 0.49950100, 0.00049900], [0.49983344, 0.00016656, 0.49983344, 0.00016656], [0.25000000, 0.25000000, 0.25000000, 0.25000000]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D"],
- "fitting_type": "map",
- "fitting_param": null,
- "value": [[0.33333333, 0.33333333, 0.33333333, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.33333333, 0.00000000, 0.50000000, 0.16666667], [0.00000000, 0.00000000, 0.00000000, 1.00000000]]
- },
- {
- "possible_states": ["A", "B", "C", "D"],
- "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D", "D"],
- "fitting_type": "mle",
- "fitting_param": null,
- "value": [[0.33333333, 0.33333333, 0.33333333, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.33333333, 0.00000000, 0.50000000, 0.16666667], [0.00000000, 0.00000000, 0.00000000, 1.00000000]]
- }
- ]
+{
+ "fit_function_data": [
+ {
+ "possible_states": ["A", "B", "C"],
+ "f": "(x_value + y_value)**2.0",
+ "quadrature_type": "gauss-chebyshev",
+ "quadrature_interval": null,
+ "value": [[0.00985334, 0.44118948, 0.54895719], [0.06594351, 0.51282051, 0.42123598], [0.10399481, 0.53388997, 0.36211522]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "f": "1.0 if x_index == y_index else 0.0",
+ "quadrature_type": "gauss-legendre",
+ "quadrature_interval": null,
+ "value": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "f": "1.0 + (x_value * y_value)",
+ "quadrature_type": "gauss-legendre",
+ "quadrature_interval": [5.0, 10.0],
+ "value": [[0.20773400, 0.44444400, 0.34782100], [0.20730900, 0.44444400, 0.34824700], [0.20705500, 0.44444400, 0.34850000]]
+ },
+ {
+ "possible_states": ["A", "B", "C", "D"],
+ "f": "3.0",
+ "quadrature_type": "niederreiter",
+ "quadrature_interval": null,
+ "value": [[0.25, 0.25, 0.25, 0.25], [0.25, 0.25, 0.25, 0.25], [0.25, 0.25, 0.25, 0.25], [0.25, 0.25, 0.25, 0.25]]
+ },
+ {
+ "possible_states": ["A", "B", "C", "D"],
+ "f": "(x_value * 1.5) + y_value",
+ "quadrature_type": "niederreiter",
+ "quadrature_interval": [0.0, 2.0],
+ "value": [[0.22378200, 0.31329500, 0.18670500, 0.27621800], [0.23294300, 0.29117900, 0.20882100, 0.26705700], [0.21628100, 0.33140500, 0.16859500, 0.28371900], [0.23005700, 0.29814700, 0.20185300, 0.26994300]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "f": "x_value**y_value",
+ "quadrature_type": "newton-cotes",
+ "quadrature_interval": null,
+ "value": [[0.53961500, 0.29696100, 0.16342400], [0.41259900, 0.32748000, 0.25992100], [0.35378400, 0.33292300, 0.31329300]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "f": "x_value**y_value",
+ "quadrature_type": "newton-cotes",
+ "quadrature_interval": [0.0, 2.0],
+ "value": [[0.58415600, 0.28083300, 0.13501000], [0.33333333, 0.33333333, 0.33333333], [0.22821800, 0.32081100, 0.45097100]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "f": "(x_value + y_value) * 1.75",
+ "quadrature_type": "simpson-rule",
+ "quadrature_interval": [0.0, 2.0],
+ "value": [[0.00000000, 0.66666667, 0.33333333], [0.08333333, 0.66666667, 0.25000000], [0.11111111, 0.66666667, 0.22222222]]
+ },
+ {
+ "possible_states": ["A", "B"],
+ "f": "x_value**0.5",
+ "quadrature_type": "trapezoid-rule",
+ "quadrature_interval": null,
+ "value": [[0.5, 0.5], [0.5, 0.5]]
+ },
+ {
+ "possible_states": ["A", "B"],
+ "f": "(x_value + y_value) * 0.99",
+ "quadrature_type": "trapezoid-rule",
+ "quadrature_interval": null,
+ "value": [[0.00000000, 1.00000000], [0.33333333, 0.66666667]]
+ }
+ ],
+ "fit_sequence_data": [
+ {
+ "possible_states": ["A", "B", "C"],
+ "sequence": ["A", "A", "C", "A", "C", "C", "B", "C", "A", "C", "C"],
+ "fitting_type": "map",
+ "fitting_param": null,
+ "value": [[0.25, 0.00, 0.75], [0.00, 0.00, 1.00], [0.40, 0.20, 0.40]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "sequence": ["A", "A", "C", "A", "C", "C", "B", "C", "A", "C", "C"],
+ "fitting_type": "mle",
+ "fitting_param": null,
+ "value": [[0.25, 0.00, 0.75], [0.00, 0.00, 1.00], [0.40, 0.20, 0.40]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B", "A", "A"],
+ "fitting_type": "map",
+ "fitting_param": null,
+ "value": [[0.50000000, 0.50000000, 0.00000000], [0.33333333, 0.00000000, 0.66666667], [0.20000000, 0.20000000, 0.60000000]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B", "A", "A"],
+ "fitting_type": "mle",
+ "fitting_param": null,
+ "value": [[0.50000000, 0.50000000, 0.00000000], [0.33333333, 0.00000000, 0.66666667], [0.20000000, 0.20000000, 0.60000000]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B"],
+ "fitting_type": "map",
+ "fitting_param": [[7, 15, 9], [1, 7, 7], [9, 1, 2]],
+ "value": [[0.22580600, 0.51612900, 0.25806500], [0.00000000, 0.42857100, 0.57142900], [0.64285700, 0.07142900, 0.28571400]]
+ },
+ {
+ "possible_states": ["A", "B", "C"],
+ "sequence": ["A", "B", "C", "C", "C", "C", "B", "C", "A", "A", "B", "A", "A"],
+ "fitting_type": "mle",
+ "fitting_param": true,
+ "value": [[0.49987509, 0.49987509, 0.00024981], [0.33333333, 0.00033300, 0.66633367], [0.20007995, 0.20007995, 0.59984010]]
+ },
+ {
+ "possible_states": ["A", "B", "C", "D"],
+ "sequence": ["A", "C", "C", "C", "A", "B", "C", "A", "A", "B", "A", "A", "C", "C", "A"],
+ "fitting_type": "map",
+ "fitting_param": null,
+ "value": [[0.33333333, 0.33333333, 0.33333333, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.50000000, 0.00000000, 0.50000000, 0.00000000], [0.25000000, 0.25000000, 0.25000000, 0.25000000]]
+ },
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}
\ No newline at end of file
diff --git a/tests/fixtures/fixtures_measures.json b/tests/fixtures/fixtures_measures.json
index 2a1a0e96..a28c9aab 100644
--- a/tests/fixtures/fixtures_measures.json
+++ b/tests/fixtures/fixtures_measures.json
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]
\ No newline at end of file
diff --git a/tests/fixtures/fixtures_simulations.json b/tests/fixtures/fixtures_simulations.json
index 86d7b941..e45ea168 100644
--- a/tests/fixtures/fixtures_simulations.json
+++ b/tests/fixtures/fixtures_simulations.json
@@ -1,882 +1,882 @@
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\ No newline at end of file