CmdStan-2.35.0_install

#!/usr/bin/env bash

###############################################
# Installing CmdStan 2.35.0 so that it can be used with R 4.4.0
#
# by Brian Alston, June 2024
#

dirname=$(dirname $0 2>/dev/null || pwd)
INCLUDES_DIR=${INCLUDES_DIR:-${dirname}/includes}
source ${INCLUDES_DIR}/module_maker_inc.sh
source ${INCLUDES_DIR}/require_inc.sh

require gcc-libs/10.2.0
require compilers/gnu/10.2.0

VERSION=${VERSION:-2.35.0}
INSTALL_PREFIX=${INSTALL_PREFIX:-/shared/ucl/apps/CmdStan/${VERSION}/${COMPILER_TAG}}
MD5=${MD5:-4c0597a4b630e2561a69041ed43108c4}
SRC_ARCHIVE=${SRC_ARCHIVE:-https://github.com/stan-dev/cmdstan/releases/download/v${VERSION}/cmdstan-${VERSION}.tar.gz}
ARCHIVE=${ARCHIVE:-cmdstan-${VERSION}.tar.gz}

export PATH=$INSTALL_PREFIX/bin:$PATH

echo "Building in $INSTALL_PREFIX ..."
mkdir -p $INSTALL_PREFIX
cd $INSTALL_PREFIX

wget $SRC_ARCHIVE

CHECKSUM=`md5sum ${ARCHIVE} | awk '{print $1}'`

if [[ "$MD5" == "$CHECKSUM" ]]
then
   tar -xvf ${ARCHIVE}
   cd cmdstan-${VERSION}
   make build
   
else
   echo "***** Hash mismatch,"
   echo "	Expected: $MD5"
   echo "	Got:      $CHECKSUM"
fi