From d8e26f51397fba98609f4816bf56fe7619e4f0b8 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Thu, 28 Sep 2023 14:38:30 +0000
Subject: [PATCH] Built site for CytoMDS: 0.99.2@40a3057

---
 pkgdown.yml                     | 2 +-
 reference/computeMetricMDS.html | 9 ++++++++-
 2 files changed, 9 insertions(+), 2 deletions(-)

diff --git a/pkgdown.yml b/pkgdown.yml
index ce819a4..76606dc 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 2.0.7.9000
 pkgdown_sha: c9206802f2888992de92aa41f517ba7812f05331
 articles:
   CytoMDS: CytoMDS.html
-last_built: 2023-09-28T14:10Z
+last_built: 2023-09-28T14:38Z
 
diff --git a/reference/computeMetricMDS.html b/reference/computeMetricMDS.html
index 8ac8efc..2030e0f 100644
--- a/reference/computeMetricMDS.html
+++ b/reference/computeMetricMDS.html
@@ -109,7 +109,14 @@ <h2>Value</h2>
 <li><p><code>spp</code> the stress per point obtained from the SMACOF algorithm, i.e.
 the contribution of each point to the stress loss function</p></li>
 <li><p><code>$RSq</code> R squares, for each d, from 1 to <code>nDim</code>:
-the R square when taking all dims from 1 to d.</p></li>
+the (pseudo) R square when taking all dims from 1 to d.</p></li>
+<li><p><code>$GoF</code> Goodness of fit, for each d, from 1 to <code>nDim</code>:
+the goodness of fit indicator (b/w 0 and 1) when taking all dims from 1 to d.
+Note pseudo R square and goodness of fit indicators are essentially the
+same indicator, only the definition of total sum of squares differ:</p></li>
+<li><p>for pseudo RSq: TSS is calculated using the mean pairwise distance
+as minimum</p></li>
+<li><p>for goodness of fit: TSS is calculated using 0 as minimum</p></li>
 </ul></div>
 
     <div id="ref-examples">