diff --git a/vignettes/CytoPipeline.Rmd b/vignettes/CytoPipeline.Rmd index c6788fe..ef76e9d 100644 --- a/vignettes/CytoPipeline.Rmd +++ b/vignettes/CytoPipeline.Rmd @@ -576,7 +576,10 @@ library("ggplot2") ```{r plotRetainedProp} - +#| fig.alt: > +#| Scatterplot of proportion of retained events as a function of the +#| cumulated preprocessing steps, for the two fcs files. +#| As expected, this proportion decreases at each step. myGGPlot <- function(DF, title){ stepNames = colnames(DF) rowNames = rownames(DF) @@ -606,6 +609,10 @@ p1 ```{r plotStepRemovedProp} +#| fig.alt: > +#| Scatterplot of number of events removed as a function of the +#| preprocessing step, for the two fcs files. +#| The proportion varies between 0.0 and 0.4. p2 <- myGGPlot(DF = stepRemovedProp, title = "Event proportion removed by each step") p2