From 228e863c38e36aabe1242c651e4e81165c5f34cc Mon Sep 17 00:00:00 2001 From: Laurent Gatto Date: Thu, 31 Oct 2024 16:40:06 +0100 Subject: [PATCH] rebuild book --- docs/404.html | 4 +- .../figure-html/gexp_vis1-1.png | Bin 25135 -> 25431 bytes .../figure-html/gexp_vis2-1.png | Bin 78496 -> 78496 bytes .../figure-html/gsea_res-1.png | Bin 73062 -> 72640 bytes .../figure-html/unnamed-chunk-111-1.png | Bin 117325 -> 117321 bytes .../figure-html/unnamed-chunk-116-1.png | Bin 297905 -> 297404 bytes .../figure-html/unnamed-chunk-141-1.png | Bin 74648 -> 74645 bytes .../figure-html/unnamed-chunk-16-1.png | Bin 44148 -> 44147 bytes .../figure-html/unnamed-chunk-17-1.png | Bin 44356 -> 44360 bytes .../figure-html/unnamed-chunk-19-1.png | Bin 67687 -> 67678 bytes .../figure-html/unnamed-chunk-200-1.png | Bin 126115 -> 126111 bytes .../figure-html/unnamed-chunk-3-1.png | Bin 40174 -> 38449 bytes .../figure-html/unnamed-chunk-78-1.png | Bin 83306 -> 83309 bytes docs/index.html | 4 +- docs/sec-ccl.html | 4 +- docs/sec-cli.html | 4 +- docs/sec-design.html | 4 +- docs/sec-git.html | 52 ++++++++++-------- docs/sec-gsea.html | 38 ++++++------- docs/sec-hts.html | 8 +-- docs/sec-info.html | 4 +- docs/sec-linmod.html | 8 +-- docs/sec-ms.html | 4 +- docs/sec-prot.html | 8 +-- docs/sec-rmd.html | 4 +- docs/sec-rnaseq.html | 4 +- 26 files changed, 79 insertions(+), 71 deletions(-) diff --git a/docs/404.html b/docs/404.html index b6f23b9..35c972a 100644 --- a/docs/404.html +++ b/docs/404.html @@ -13,7 +13,7 @@ - +
+
+

â–º Question

@@ -847,7 +847,7 @@

Page built: -2024-10-30 +2024-10-31 using R version 4.4.1 (2024-06-14)

diff --git a/docs/sec-info.html b/docs/sec-info.html index 26a1103..4ff15ae 100644 --- a/docs/sec-info.html +++ b/docs/sec-info.html @@ -13,7 +13,7 @@ - +

Such situation require a new model formula syntax

+
+

Such situation require a new model formula syntax

~ genotype * condition

which is equivalent to

~ genotype + condition + genotype * condition
@@ -1085,7 +1085,7 @@

Page built: -2024-10-30 +2024-10-31 using R version 4.4.1 (2024-06-14)

diff --git a/docs/sec-ms.html b/docs/sec-ms.html index 1b36643..a102877 100644 --- a/docs/sec-ms.html +++ b/docs/sec-ms.html @@ -13,7 +13,7 @@ - +

Using the pipeline described above, we would would identify a single +

+

Using the pipeline described above, we would would identify a single differentially expressed protein at an 5 percent FDR but miss out the other 32 expected spike-in proteins. @@ -1396,7 +1396,7 @@

Page built: -2024-10-30 +2024-10-31 using R version 4.4.1 (2024-06-14)

diff --git a/docs/sec-rmd.html b/docs/sec-rmd.html index 281aca3..2a3912c 100644 --- a/docs/sec-rmd.html +++ b/docs/sec-rmd.html @@ -13,7 +13,7 @@ - +