index.Rmd

---
title: "Pancancer Microbial Pathways"
author: "Abraham Gihawi"
date: "10/05/2021"
output: html_document
---

This repository provides access to the predicted of microbial pathways of non-human contigs assembled from cancer sequence data.

For information on how this data was generated, please refer to the [GitHub repository](https://github.com/UEA-Cancer-Genetics-Lab/Pancancer_Microbial_Pathways).

```{r preparingenvironment, eval=TRUE, echo=FALSE, message=FALSE, warning=FALSE}
library(tidyverse)
library(plotly)
library(magrittr)
library(DT)
```

```{r loaddata, eval=TRUE, echo=FALSE, message=FALSE, warning=FALSE}
pancancer <- read_tsv(file='data/pancancer_pathways.tsv', col_names = TRUE)

datatable(pancancer, 
          options = list(pageLength = 20, autoWidth=TRUE),
          class = 'cell-border stripe',
          filter = 'top',
          rownames = FALSE,
          colnames = c('Pathway', 'InterProScan Hits', 'Ontology'))
```