rloadest won't fully install on mac

[Kellyb90]

Hi there, I've been trying to install rloadest on my computer and I'm not having a lot of luck. I keep getting this error message related to smwrStats (pasted below). I have updated my R and Rstudio which didn't help. Any suggestions is greatly appreciated!

Warning message:
In i.p(...) :
installation of package ‘/var/folders/dn/132b2sc97dv09dhw6_d4_4f00000gn/T//RtmpfyunLS/file8fc2770abeae/smwrStats_0.7.6.tar.gz’ had non-zero exit status

[ldecicco-USGS]

The first thing I would try is to choose "None" on any updates:

remotes::install_github("USGS-R/smwrStats", force = TRUE)
Downloading GitHub repo USGS-R/smwrStats@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All                                           
2: CRAN packages only                            
3: None                                          
4: pillar       (1.5.1      -> 1.6.0     ) [CRAN]
5: RcppArmad... (0.10.2.2.0 -> 0.10.4.0.0) [CRAN]
6: knitr        (1.31       -> 1.32      ) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 3
√  checking for file 'C:\Users\ldecicco\AppData\Local\Temp\1\Rtmp8YO27G\remotese383e9a3ab9\USGS-R-smwrStats-2e02eb7/DESCRIPTION' (495ms)
-  preparing 'smwrStats': (1.3s)
√  checking DESCRIPTION meta-information ... 

If that doesn't work, could you paste in what you get when you run:

devtools::session_info()

[Kellyb90]

Ok I tried choosing "none" on updates and that didn't work. This is what came up after running:

devtools::session_info()
─ Session info ──────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.0.5 (2021-03-31)
os macOS High Sierra 10.13.6
system x86_64, darwin17.0
ui RStudio
language (EN)
collate en_CA.UTF-8
ctype en_CA.UTF-8
tz America/Toronto
date 2021-04-14

─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date lib source
abind 1.4-5 2016-07-21 [1] CRAN (R 4.0.2)
akima 0.6-2.1 2020-05-30 [1] CRAN (R 4.0.2)
cachem 1.0.4 2021-02-13 [1] CRAN (R 4.0.2)
callr 3.6.0 2021-03-28 [1] CRAN (R 4.0.2)
car 3.0-10 2020-09-29 [1] CRAN (R 4.0.2)
carData 3.0-4 2020-05-22 [1] CRAN (R 4.0.2)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.0.2)
cli 2.4.0 2021-04-05 [1] CRAN (R 4.0.2)
colorspace 2.0-0 2020-11-11 [1] CRAN (R 4.0.2)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.2)
curl 4.3 2019-12-02 [1] CRAN (R 4.0.1)
data.table 1.14.0 2021-02-21 [1] CRAN (R 4.0.2)
dataRetrieval * 2.7.7 2021-03-06 [1] CRAN (R 4.0.2)
desc 1.3.0 2021-03-05 [1] CRAN (R 4.0.2)
devtools 2.4.0 2021-04-07 [1] CRAN (R 4.0.2)
digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.2)
dplyr * 1.0.5 2021-03-05 [1] CRAN (R 4.0.2)
ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.2)
fansi 0.4.2 2021-01-15 [1] CRAN (R 4.0.2)
farver 2.1.0 2021-02-28 [1] CRAN (R 4.0.2)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.0.2)
forcats 0.5.1 2021-01-27 [1] CRAN (R 4.0.2)
forecast 8.14 2021-03-11 [1] CRAN (R 4.0.2)
foreign 0.8-81 2020-12-22 [1] CRAN (R 4.0.5)
fracdiff 1.5-1 2020-01-24 [1] CRAN (R 4.0.2)
fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.2)
generics 0.1.0 2020-10-31 [1] CRAN (R 4.0.2)
ggplot2 * 3.3.3 2020-12-30 [1] CRAN (R 4.0.2)
ggtext 0.1.1 2020-12-17 [1] CRAN (R 4.0.2)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2)
gridtext 0.1.4 2020-12-10 [1] CRAN (R 4.0.2)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.2)
haven 2.3.1 2020-06-01 [1] CRAN (R 4.0.2)
hms 1.0.0 2021-01-13 [1] CRAN (R 4.0.2)
httr 1.4.2 2020-07-20 [1] CRAN (R 4.0.2)
imputeTS 3.2 2021-01-16 [1] CRAN (R 4.0.2)
jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.0.2)
KernSmooth 2.23-18 2020-10-29 [1] CRAN (R 4.0.5)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.0.2)
lattice 0.20-41 2020-04-02 [1] CRAN (R 4.0.5)
leaps 3.1 2020-01-16 [1] CRAN (R 4.0.2)
lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2)
lmtest 0.9-38 2020-09-09 [1] CRAN (R 4.0.2)
lubridate * 1.7.10 2021-02-26 [1] CRAN (R 4.0.2)
magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.2)
memoise 2.0.0 2021-01-26 [1] CRAN (R 4.0.2)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.2)
nlme 3.1-152 2021-02-04 [1] CRAN (R 4.0.5)
nnet 7.3-15 2021-01-24 [1] CRAN (R 4.0.5)
openxlsx 4.2.3 2020-10-27 [1] CRAN (R 4.0.2)
pillar 1.6.0 2021-04-13 [1] CRAN (R 4.0.5)
pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 4.0.2)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.2)
pkgload 1.2.1 2021-04-06 [1] CRAN (R 4.0.2)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.2)
processx 3.5.1 2021-04-04 [1] CRAN (R 4.0.2)
ps 1.6.0 2021-02-28 [1] CRAN (R 4.0.2)
purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.2)
quadprog 1.5-8 2019-11-20 [1] CRAN (R 4.0.2)
quantmod 0.4.18 2020-12-09 [1] CRAN (R 4.0.2)
R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.2)
randtests 1.0 2014-11-17 [1] CRAN (R 4.0.2)
Rcpp 1.0.6 2021-01-15 [1] CRAN (R 4.0.2)
readxl 1.3.1 2019-03-13 [1] CRAN (R 4.0.2)
remotes 2.3.0 2021-04-01 [1] CRAN (R 4.0.2)
rio 0.5.26 2021-03-01 [1] CRAN (R 4.0.2)
RiverLoad * 1.0.2 2019-12-10 [1] CRAN (R 4.0.1)
rlang 0.4.10 2020-12-30 [1] CRAN (R 4.0.2)
rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.0.2)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.2)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.2)
smwrBase * 1.1.5 2021-04-13 [1] Github (USGS-R/smwrBase@2478663)
smwrData * 1.1.2 2021-04-13 [1] Github (USGS-R/smwrData@c0a68c3)
smwrGraphs * 1.1.4.9000 2021-04-13 [1] Github (USGS-R/smwrGraphs@f3debe7)
sp 1.4-5 2021-01-10 [1] CRAN (R 4.0.2)
stinepack 1.4 2018-07-30 [1] CRAN (R 4.0.2)
stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.2)
testthat 3.0.2 2021-02-14 [1] CRAN (R 4.0.2)
tibble 3.1.0 2021-02-25 [1] CRAN (R 4.0.2)
tidyr * 1.1.3 2021-03-03 [1] CRAN (R 4.0.2)
tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.2)
timeDate 3043.102 2018-02-21 [1] CRAN (R 4.0.2)
tseries 0.10-48 2020-12-04 [1] CRAN (R 4.0.2)
TTR 0.24.2 2020-09-01 [1] CRAN (R 4.0.2)
urca 1.3-0 2016-09-06 [1] CRAN (R 4.0.2)
usethis 2.0.1 2021-02-10 [1] CRAN (R 4.0.2)
utf8 1.2.1 2021-03-12 [1] CRAN (R 4.0.2)
vctrs 0.3.7 2021-03-29 [1] CRAN (R 4.0.2)
withr 2.4.1 2021-01-26 [1] CRAN (R 4.0.2)
xml2 1.3.2 2020-04-23 [1] CRAN (R 4.0.2)
xts 0.12.1 2020-09-09 [1] CRAN (R 4.0.2)
zip 2.1.1 2020-08-27 [1] CRAN (R 4.0.2)
zoo 1.8-9 2021-03-09 [1] CRAN (R 4.0.2)

[1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library

[ldecicco-USGS]

Ah, yeah - I think there's some additional work that needs to happen for Macs. @wdwatkins or @aappling-usgs ...do either of you remember special installation instructions for Mac users?

[aappling-usgs]

I don't remember, sorry.

[wdwatkins]

remotes::install_github("USGS-R/smwrStats", force = TRUE) worked fine for me on my Mac (I skipped all package updates). @Kellyb90 Can you post your install command and the full output? I wonder if there is another error happening that would be more descriptive.

[Kellyb90]

@wdwatkins it didn't work but here is the full output:

remotes::install_github("USGS-R/smwrStats", force = TRUE)
Downloading GitHub repo USGS-R/smwrStats@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All
2: CRAN packages only
3: None
4: RcppArmad... (0.10.2.2.0 -> 0.10.4.0.0) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 3
✓ checking for file ‘/private/var/folders/dn/132b2sc97dv09dhw6_d4_4f00000gn/T/Rtmpmhcxz6/remotes104163e425abd/USGS-R-smwrStats-2e02eb7/DESCRIPTION’ ...
─ preparing ‘smwrStats’:
✓ checking DESCRIPTION meta-information ...
─ cleaning src
─ checking for LF line-endings in source and make files and shell scripts (335ms)
─ checking for empty or unneeded directories
─ building ‘smwrStats_0.7.6.tar.gz’

• installing source package ‘smwrStats’ ...
  ** using staged installation
  ** libs
  gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c d_logam.f -o d_logam.o
  make: gfortran: No such file or directory
  make: *** [d_logam.o] Error 1
  ERROR: compilation failed for package ‘smwrStats’
• removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/smwrStats’
• restoring previous ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/smwrStats’
  Warning message:
  In i.p(...) :
  installation of package ‘/var/folders/dn/132b2sc97dv09dhw6_d4_4f00000gn/T//Rtmpmhcxz6/file1041676534e39/smwrStats_0.7.6.tar.gz’ had non-zero exit status

[wdwatkins]

make: gfortran: No such file or directory

Looks like you need to install gfortran to be able to build the package, or specify the path to it if it's already installed. I do recall messing with this some years ago and getting it to work, but not sure where I would have put the instructions...

Do you use homebrew, or otherwise know if you have gfortran?

[Kellyb90]

@wdwatkins I don't believe I have either. I am relatively new to R so I don't think I would of had a reason to install either of those. Can I download it for free somewhere?

[wdwatkins]

Yes, gfortran is an open-source fortran compiler, it generally comes with the gcc set of compilers. Homebrew is a pretty popular package manager for Macs: https://brew.sh/. There is a terminal command you can copy and paste there to install brew, which you can then use to install gcc with brew install gcc in the terminal.

[ldecicco-USGS]

I forgot I tried to set this up once. You all should try and let me know if it works:

options(repos = c(
  ldeciccousgs = 'https://ldecicco-usgs.r-universe.dev',
  CRAN = 'https://cloud.r-project.org'))

# Install some packages
install.packages('rloadest')

I think it has a Mac binary which might solve these problems.